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13_1_40cm_4_scaffold_274

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_274_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..483)
DNA (483bp) protein (161aa)
ABC transporter, ATP-binding protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F6G4_9DELT
livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
amino acid ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_274_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(470..2122)
DNA (1653bp) protein (551aa)
putative ABC transporter permiase component id=14626607 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
putative ABC transporter permiase component Tax=CSP1_6_Rokubacteria
ABC transporter-like protein
13_1_40cm_4_scaffold_274_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2124..3038)
DNA (915bp) protein (305aa)
putative Branched-chain amino acid ABC transporter (permease protein); livH-like protein id=14626606 bin=bin7_NC10_sister species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative Branched-chain amino acid ABC transporter (permease protein); livH-like protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_274_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(3002..4276)
DNA (1275bp) protein (425aa)
putative Leu/Ile/Val-binding protein homolog 8 id=14626605 bin=bin7_NC10_sister species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative Leu/Ile/Val-binding protein homolog 8 Tax=CSP1_6_Rokubacteria
putative Leu/Ile/Val-binding protein homolog 8
13_1_40cm_4_scaffold_274_5
unknown

Not on your lists

comp(4347..4772)
DNA (426bp) protein (142aa)

This feature has no annotations

13_1_40cm_4_scaffold_274_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4809..5354
DNA (546bp) protein (182aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14626604 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_274_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5351..5785)
DNA (435bp) protein (145aa)
MaoC-like dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyl dehydratase id=2783141 bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC-like dehydratase
13_1_40cm_4_scaffold_274_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5799..6254)
DNA (456bp) protein (152aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
MaoC-like dehydratase id=2783137 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC-like dehydratase
13_1_40cm_4_scaffold_274_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6259..6654)
DNA (396bp) protein (132aa)
thioesterase family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Thioesterase superfamily protein id=2783134 bin=GWF2_Methylomirabilis_70_14 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_274_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6666..7340)
DNA (675bp) protein (225aa)
hypothetical protein; K07090 Tax=GWC2_Rokubacteria_70_16_curated
Putative membrane protein id=4911921 bin=GWC2_Methylomirabilis_70_16 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_274_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7360..8532
DNA (1173bp) protein (391aa)
major facilitator transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
EmrB/QacA family drug resistance transporter id=14625974 bin=bin7_NC10_sister species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator superfamily transporter
13_1_40cm_4_scaffold_274_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8602..9639
DNA (1038bp) protein (346aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626596 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_274_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9636..9917
DNA (282bp) protein (94aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4905363 bin=GWA2_Methylomirabilis_73_35 species=Saccharomonospora marina genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_274_14
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

9939..10166
DNA (228bp) protein (76aa)
Uncharacterized protein id=4905364 bin=GWA2_Methylomirabilis_73_35 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein
13_1_40cm_4_scaffold_274_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10397..11197
DNA (801bp) protein (267aa)
hypothetical protein; K07019 Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein; K07019 id=14626593 bin=bin7_NC10_sister species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase fold protein
13_1_40cm_4_scaffold_274_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11199..12506
DNA (1308bp) protein (436aa)
fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (EC:5.2.1.8)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00036FA4B3
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_274_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12503..13135
DNA (633bp) protein (211aa)
ushA; 5'-nucleotidase (EC:3.1.3.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5'-nucleotidase id=4178156 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative 5`-nucleotidase
13_1_40cm_4_scaffold_274_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13147..14022
DNA (876bp) protein (292aa)
ushA; 5'-nucleotidase (EC:3.1.3.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ushA; 5'-nucleotidase (EC:3.1.3.5)
5'-nucleotidase n=1 Tax=uncultured prokaryote RepID=H5SKN9_9ZZZZ
13_1_40cm_4_scaffold_274_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14257..14634
DNA (378bp) protein (126aa)
Two component transcriptional regulator id=4905366 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Pseudogulbenkiania taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
13_1_40cm_4_scaffold_274_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14768..15712)
DNA (945bp) protein (315aa)
Peptide ABC transporter membrane protein id=4905398 bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
peptide ABC transporter permease
13_1_40cm_4_scaffold_274_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15712..16671)
DNA (960bp) protein (320aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IM10_METNO
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_274_22
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16751..18547)
DNA (1797bp) protein (599aa)
peptide ABC transporter substrate-binding protein (EC:3.6.3.24)
Peptide ABC transporter substrate-binding protein id=4797023 bin=GWC2_Methylomirabilis_70_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptide ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
13_1_40cm_4_scaffold_274_23
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18618..20414)
DNA (1797bp) protein (599aa)
Peptide ABC transporter substrate-binding protein id=4797023 bin=GWC2_Methylomirabilis_70_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptide ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
peptide ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_274_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20623..21279
DNA (657bp) protein (219aa)
resA; thiol-disulfide oxidoreductase ResA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Thiol-disulfide oxidoreductase id=3666472 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
resA; thiol-disulfide oxidoreductase resA
13_1_40cm_4_scaffold_274_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21276..22016
DNA (741bp) protein (247aa)
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cytochrome c biogenesis protein CcdA id=3666473 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccdA; cytochrome c biogenesis protein CcdA
13_1_40cm_4_scaffold_274_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22021..22923
DNA (903bp) protein (301aa)
homoserine kinase; K00872 homoserine kinase [EC:2.7.1.39] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Homoserine kinase id=3666474 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
homoserine kinase
13_1_40cm_4_scaffold_274_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22972..24171
DNA (1200bp) protein (400aa)
Major facilitator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Major facilitator id=1801598 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Major facilitator
13_1_40cm_4_scaffold_274_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24205..25353
DNA (1149bp) protein (383aa)
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13)
2'-deoxycytidine 5'-triphosphate deaminase id=3666475 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_274_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25416..25616
DNA (201bp) protein (67aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Prokaryotic ubiquitin-like protein Pup id=4797071 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_274_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25618..25827
DNA (210bp) protein (70aa)
Regulatory protein, FmdB family n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q30Y30_DESDG
FmdB family regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
FmdB family regulatory protein
Displaying items 1-30 of 46 in total

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