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13_1_40cm_4_scaffold_374

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_374_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2..169)
DNA (168bp) protein (56aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_1_40cm_4_scaffold_374_2
unknown

Not on your lists

comp(291..530)
DNA (240bp) protein (80aa)

This feature has no annotations

13_1_40cm_4_scaffold_374_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

642..1835
DNA (1194bp) protein (398aa)
molybdopterin-guanine dinucleotide biosynthesis protein B; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Molybdenum cofactor synthesis domain protein id=3926923 bin=GWC2_Methylomirabilis_70_16 species=Thioalkalivibrio thiocyanoxidans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
molybdenum cofactor biosynthesis protein MoaA
13_1_40cm_4_scaffold_374_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1835..3397
DNA (1563bp) protein (521aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14627421 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_374_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

3402..3671
DNA (270bp) protein (90aa)
UPF0176 protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
UPF0176 protein id=3926920 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_374_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3855..5414
DNA (1560bp) protein (520aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=14627849 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_374_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

5414..6328
DNA (915bp) protein (305aa)
transketolase (EC:2.2.1.1); K00615 transketolase [EC:2.2.1.1] id=14627850 bin=bin7_NC10_sister species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
transketolase (EC:2.2.1.1); K00615 transketolase [EC:2.2.1.1] Tax=CSP1_6_Rokubacteria
transketolase (EC:2.2.1.1)
13_1_40cm_4_scaffold_374_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6328..7254
DNA (927bp) protein (309aa)
transketolase central region; K00615 transketolase [EC:2.2.1.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
transketolase; K00615 transketolase [EC:2.2.1.1] id=14627851 bin=bin7_NC10_sister species=Anaeromusa acidaminophila genus=Anaeromusa taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
transketolase, C-terminal subunit
13_1_40cm_4_scaffold_374_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(7365..8639)
DNA (1275bp) protein (425aa)
fumarase, class II (EC:4.2.1.2) Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
fumarase, class II (EC:4.2.1.2)
Fumarate hydratase class II n=1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9TYP6_9CYAN
13_1_40cm_4_scaffold_374_10
unknown

Not on your lists

9251..9598
DNA (348bp) protein (116aa)

This feature has no annotations

13_1_40cm_4_scaffold_374_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9514..10308)
DNA (795bp) protein (265aa)
ABC transporter; K09686 antibiotic transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC-2 type transporter id=2419360 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_4_scaffold_374_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10292..11227)
DNA (936bp) protein (312aa)
polyamine-transporting ATPase (EC:3.6.3.31); K09687 antibiotic transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
polyamine-transporting ATPase (EC:3.6.3.31)
Polyamine-transporting ATPase id=2419362 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_374_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11253..11633
DNA (381bp) protein (127aa)
ferredoxin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4638245 bin=GWC2_Methylomirabilis_70_16 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
2Fe-2S ferredoxin
13_1_40cm_4_scaffold_374_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11626..12048
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC53_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_374_15
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12045..13064
DNA (1020bp) protein (340aa)
1,4-dihydroxy-2-naphtoate prenyltransferase; K02548 1,4-dihydroxy-2-naphthoate octaprenyltransferase [EC:2.5.1.74 2.5.1.-] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
1,4-dihydroxy-2-naphtoate prenyltransferase; K02548 1,4-dihydroxy-2-naphthoate octaprenyltransferase [EC:2.5.1.74 2.5.1.-] id=24418275 bin=RBG_19FT_COMBO_GAL15_69_19 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
1,4-dihydroxy-2-naphtoate prenyltransferase
13_1_40cm_4_scaffold_374_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13070..14578)
DNA (1509bp) protein (503aa)
putative membrane protein id=2419364 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoriales cyanobacterium JSC-12 genus=unknown taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_374_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14575..15351)
DNA (777bp) protein (259aa)
glycosyl transferase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glycosyl transferase id=2419366 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoriales cyanobacterium JSC-12 genus=unknown taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase family protein
13_1_40cm_4_scaffold_374_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15348..15992)
DNA (645bp) protein (215aa)
Methionine biosynthesis protein MetW id=2419451 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoriales cyanobacterium JSC-12 genus=unknown taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type 11 methyltransferase Tax=GWA2_Rokubacteria_73_35_curated
glycosyl transferase family 2
13_1_40cm_4_scaffold_374_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16124..16852)
DNA (729bp) protein (243aa)
Molybdopterin binding domain protein id=2419455 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin binding domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
molybdopterin binding domain-containing protein
13_1_40cm_4_scaffold_374_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16908..17708
DNA (801bp) protein (267aa)
short-chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Short-chain dehydrogenase/reductase SDR id=4888038 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
short-chain dehydrogenase
13_1_40cm_4_scaffold_374_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17705..18496
DNA (792bp) protein (264aa)
undecaprenyl pyrophosphate phosphatase; K06153 undecaprenyl-diphosphatase [EC:3.6.1.27] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Undecaprenyl-diphosphatase id=4800320 bin=GWC2_Methylomirabilis_70_16 species=Alishewanella agri genus=Alishewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
undecaprenyl pyrophosphate phosphatase
13_1_40cm_4_scaffold_374_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18525..19310)
DNA (786bp) protein (262aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Deoxyribonuclease id=4888041 bin=GWC2_Methylomirabilis_70_24 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
TatD-related deoxyribonuclease
13_1_40cm_4_scaffold_374_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19322..20656)
DNA (1335bp) protein (445aa)
pmbA; protease pmbA; K03592 PmbA protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptidase U62 id=5006712 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pmbA; protease pmbA
13_1_40cm_4_scaffold_374_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20661..22109)
DNA (1449bp) protein (483aa)
tldD; peptidase TldD Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative peptidase TldD id=4888043 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
tldD; peptidase TldD
13_1_40cm_4_scaffold_374_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22244..23047)
DNA (804bp) protein (268aa)
Periplasmic binding protein id=5006709 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
periplasmic-binding protein; K02016 iron complex transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
periplasmic binding protein
13_1_40cm_4_scaffold_374_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23059..24387)
DNA (1329bp) protein (443aa)
amidohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amidohydrolase id=5006708 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase
13_1_40cm_4_scaffold_374_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24502..25425
DNA (924bp) protein (308aa)
two-component hybrid sensor and regulator Tax=GWA2_Rokubacteria_73_35_curated
Two-component hybrid sensor and regulator id=5006707 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum sp. genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative two-component hybrid sensor and regulator
13_1_40cm_4_scaffold_374_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25666..26094)
DNA (429bp) protein (143aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4880679 bin=GWC2_Chloroflexi_73_18 species=Thermus aquaticus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
13_1_40cm_4_scaffold_374_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(26440..27540)
DNA (1101bp) protein (367aa)
glycine oxidase; K03153 glycine oxidase [EC:1.4.3.19] Tax=GWA2_Rokubacteria_70_23_curated
Putative glycine oxidase id=4584627 bin=GWF2_Methylomirabilis_70_14 species=Azorhizobium caulinodans genus=Azorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycine oxidase ThiO
13_1_40cm_4_scaffold_374_30
unknown

Not on your lists

27802..28167
DNA (366bp) protein (122aa)

This feature has no annotations

Displaying items 1-30 of 34 in total

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