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13_1_40cm_4_scaffold_4430

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4430_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1..678
DNA (678bp) protein (226aa)
had-superfamily hydrolase, subfamily iia; K02566 NagD protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HAD-superfamily hydrolase, subfamily IIA id=4644046 bin=GWF2_Methylomirabilis_70_14 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
had-superfamily hydrolase, subfamily iia
13_1_40cm_4_scaffold_4430_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

675..2297
DNA (1623bp) protein (541aa)
FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
FAD dependent oxidoreductase id=4903986 bin=GWC2_Methylomirabilis_70_16 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
FAD dependent oxidoreductase
13_1_40cm_4_scaffold_4430_3
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2344..3642
DNA (1299bp) protein (433aa)
Extracellular solute-binding protein, family 1 n=1 Tax=alpha proteobacterium BAL199 RepID=A8U109_9PROT
Extracellular solute-binding protein, family 1 {ECO:0000313|EMBL:EDP61946.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
extracellular solute-binding protein
13_1_40cm_4_scaffold_4430_4
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3651..4532
DNA (882bp) protein (294aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2K1Y4_9PROT
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:EKE71510.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillace
ugpA; sn-glycerol-3-phosphate transport system permease protein
13_1_40cm_4_scaffold_4430_5
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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4532..5380
DNA (849bp) protein (283aa)
ugpE; sn-glycerol-3-phosphate transporter permease protein UgpE; K05815 sn-glycerol 3-phosphate transport system permease protein Tax=GWA2_Rhodocyclales_65_20_curated
twin-arginine translocation pathway signal protein; K05815 sn-glycerol 3-phosphate transport system permease protein id=5082100 bin=GWF1_Burkholderiales_GWF1_66_17 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ugpE; sn-glycerol-3-phosphate transporter permease protein UgpE
13_1_40cm_4_scaffold_4430_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5377..6129
DNA (753bp) protein (251aa)
glycerophosphodiester phosphodiesterase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycerophosphodiester phosphodiesterase family protein id=4980422 bin=GWA2_Methylomirabilis_73_35 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycerophosphodiester phosphodiesterase
13_1_40cm_4_scaffold_4430_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6126..7631
DNA (1506bp) protein (502aa)
glycerol kinase (EC:2.7.1.30); K00864 glycerol kinase [EC:2.7.1.30] Tax=GWA2_Rokubacteria_73_35_curated
Glycerol kinase id=4980423 bin=GWA2_Methylomirabilis_73_35 species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycerol kinase
13_1_40cm_4_scaffold_4430_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7732..8841
DNA (1110bp) protein (370aa)
Extracellular solute-binding protein, family 1 id=4644135 bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular solute-binding protein Tax=GWA2_Rokubacteria_70_23_curated
extracellular solute-binding protein
13_1_40cm_4_scaffold_4430_9
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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8908..9840
DNA (933bp) protein (311aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262) Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Xanthobacteraceae RepID=UPI00036FD9ED
13_1_40cm_4_scaffold_4430_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

9855..10976
DNA (1122bp) protein (374aa)
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein id=14625920 bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein Tax=CSP1_6_Rokubacteria
ABC transporter-like protein
13_1_40cm_4_scaffold_4430_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

10957..12663
DNA (1707bp) protein (569aa)
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein id=14625921 bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein Tax=CSP1_6_Rokubacteria
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_4430_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12738..12968
DNA (231bp) protein (77aa)
ATP synthase-associated magnesium import membrane protein AtpZ id=4980424 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
magnesium transporter
13_1_40cm_4_scaffold_4430_13
unknown

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12955..13323
DNA (369bp) protein (123aa)

This feature has no annotations

13_1_40cm_4_scaffold_4430_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13323..14090
DNA (768bp) protein (256aa)
ATP synthase subunit A (EC:3.6.3.14) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ATP synthase subunit A (EC:3.6.3.14) id=14625924 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ATP synthase subunit A (EC:3.6.3.14)
13_1_40cm_4_scaffold_4430_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

14120..14449
DNA (330bp) protein (110aa)
ATP synthase subunit C, membrane-bound, F0 sector; DCCD-binding (EC:3.6.3.14) Tax=GWC2_Rokubacteria_70_16_curated
ATP synthase subunit C, membrane-bound, F0 sector DCCD-binding (Modular protein) id=4246292 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ATP synthase f0 subcomplex c subunit
13_1_40cm_4_scaffold_4430_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14537..15145
DNA (609bp) protein (203aa)
Redox-sensing transcriptional repressor rex id=4980428 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rex; redox-sensing transcriptional repressor rex Tax=GWA2_Rokubacteria_73_35_curated
rex; redox-sensing transcriptional repressor rex
13_1_40cm_4_scaffold_4430_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15454..18354
DNA (2901bp) protein (967aa)
mfd; transcription-repair-coupling factor (TRCF) (ATP-dependent helicase mfd) (EC:3.6.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
mfd; transcription-repair-coupling factor (TRCF) (ATP-dependent helicase mfd) (EC:3.6.1.-)
Transcription-repair coupling factor id=4980429 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_4430_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18351..19427
DNA (1077bp) protein (359aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] Tax=GWA2_Rokubacteria_73_35_curated
PpiC-type peptidyl-prolyl cis-trans isomerase id=4980430 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PpiC-type peptidyl-prolyl cis-trans isomerase
13_1_40cm_4_scaffold_4430_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

19571..20899
DNA (1329bp) protein (443aa)
rho; transcription termination factor Rho; K03628 transcription termination factor Rho Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
rho; transcription termination factor Rho id=14625929 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
transcription termination factor Rho
13_1_40cm_4_scaffold_4430_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


21005..21220
DNA (216bp) protein (72aa)
LSU ribosomal protein L31P Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L31 id=4246284 bin=GWC2_Methylomirabilis_70_16 species=Faecalibacterium prausnitzii genus=Faecalibacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
LSU ribosomal protein L31P
13_1_40cm_4_scaffold_4430_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21259..22332
DNA (1074bp) protein (358aa)
peptide chain release factor 1; K02835 peptide chain release factor 1 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptide chain release factor 1 id=4980433 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prfA; peptide chain release factor 1
13_1_40cm_4_scaffold_4430_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22329..22529
DNA (201bp) protein (67aa)
Modification methylase HemK (EC:2.1.1.72); K02493 release factor glutamine methyltransferase [EC:2.1.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Release factor glutamine methyltransferase id=4980434 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 22 items

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