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13_1_40cm_4_scaffold_480

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_480_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

1..822
DNA (822bp) protein (274aa)
cation transport protein (EC:3.6.1.-)
Cation efflux protein n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZC05_NODSP
cation diffusion facilitator family transporter Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_4_scaffold_480_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

816..1667
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A642_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_480_3
unknown

Not on your lists

1785..1955
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_4_scaffold_480_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2080..3021
DNA (942bp) protein (314aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=RBG_16_Gemmatimonadetes_66_8_curated
formate dehydrogenase subunit alpha (EC:1.7.99.4)
Formate dehydrogenase, alpha subunit n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NH78_DESAR
13_1_40cm_4_scaffold_480_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

3059..5005
DNA (1947bp) protein (649aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=GWC2_Gemmatimonadetes_71_10_curated
NAD-dependent formate dehydrogenase catalytic subunit n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2C2_THEOJ
NAD-dependent formate dehydrogenase catalytic subunit
13_1_40cm_4_scaffold_480_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5052..5843
DNA (792bp) protein (264aa)
putative oxidoreductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] id=14631359 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_480_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

5881..6909
DNA (1029bp) protein (343aa)
threonine 3-dehydrogenase (EC:1.1.1.103); K00060 threonine 3-dehydrogenase [EC:1.1.1.103] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Threonine 3-dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A639_GEMAT
Alcohol dehydrogenase GroES domain protein
13_1_40cm_4_scaffold_480_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

6906..8099
DNA (1194bp) protein (398aa)
kbl; putative 2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29); K00639 glycine C-acetyltransferase [EC:2.3.1.29] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative 2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A638_GEMAT
aminotransferase class I and II
13_1_40cm_4_scaffold_480_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

8244..9485
DNA (1242bp) protein (414aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_4_scaffold_480_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9469..10581)
DNA (1113bp) protein (371aa)
Zn-dependent dipeptidase, microsomal dipeptidase {ECO:0000313|EMBL:CDM65778.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CDM65778.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4;
Putative dipeptidase n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TXT9_9DELT
M19 family peptidase
13_1_40cm_4_scaffold_480_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10566..11156)
DNA (591bp) protein (197aa)
mgh; 3-methyladenine DNA glycosylase (EC:3.2.2.-); K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21] Tax=RBG_16_Gemmatimonadetes_66_8_curated
mgh; 3-methyladenine DNA glycosylase (EC:3.2.2.-)
Putative 3-methyladenine DNA glycosylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A637_GEMAT
13_1_40cm_4_scaffold_480_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(11153..13015)
DNA (1863bp) protein (621aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A636_GEMAT
NYN domain, limkain-b1-type
NYN domain, limkain-b1-type {ECO:0000313|EMBL:AHG90142.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_480_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

13440..13973
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003723C5C
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG88709.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_480_14
unknown

Not on your lists

13970..15016
DNA (1047bp) protein (349aa)

This feature has no annotations

13_1_40cm_4_scaffold_480_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14997..15416)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FR25_SORC5
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
protein of unknown function UPF0047
13_1_40cm_4_scaffold_480_16
unknown

Not on your lists

15479..15925
DNA (447bp) protein (149aa)

This feature has no annotations

13_1_40cm_4_scaffold_480_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

16463..16615
DNA (153bp) protein (51aa)
PAS:ATP-binding region, ATPase-like:Histidine kinase A-like n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NXB4_9DELT
histidine kinase
putative two-component histidine kinase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_4_scaffold_480_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

16612..17991
DNA (1380bp) protein (460aa)
Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A631_GEMAT
putative NtrC family two-component response regulator Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative NtrC family two-component response regulator
13_1_40cm_4_scaffold_480_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

18108..19853
DNA (1746bp) protein (582aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A630_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_4_scaffold_480_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

19855..20478
DNA (624bp) protein (208aa)
Protein of unknown function DUF4390
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_4_scaffold_480_21
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20475..20876)
DNA (402bp) protein (134aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
hypothetical protein id=15192333 bin=GWC2_NOV_55_46 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_NOV_55_46 organism_group=Proteobacteria
hypothetical protein
13_1_40cm_4_scaffold_480_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(20873..21478)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A628_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
HNH endonuclease
13_1_40cm_4_scaffold_480_23
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(21519..22967)
DNA (1449bp) protein (483aa)
argH; argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:S
Argininosuccinate lyase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4N7_GEMAT
13_1_40cm_4_scaffold_480_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(22967..24196)
DNA (1230bp) protein (410aa)
argininosuccinate synthase family protein (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Uncharacterized protein n=2 Tax=Populus RepID=B9HKP8_POPTR
Argininosuccinate synthase
13_1_40cm_4_scaffold_480_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

24318..24905
DNA (588bp) protein (196aa)
Twin-arginine translocation pathway signal n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GQN1_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_480_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

24905..26590
DNA (1686bp) protein (562aa)
Glucose-methanol-choline oxidoreductase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJG4_RHOM4
glucose-methanol-choline oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glucose-methanol-choline oxidoreductase
13_1_40cm_4_scaffold_480_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

26632..27477
DNA (846bp) protein (282aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJG1_RHOM4
xylose isomerase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
xylose isomerase domain-containing protein
13_1_40cm_4_scaffold_480_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

27477..28340
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000362ADA2
Xylose isomerase domain-containing protein TIM barrel
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AHG88425.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_480_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

28328..30025
DNA (1698bp) protein (566aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7A9_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
GMC oxidoreductase
13_1_40cm_4_scaffold_480_30
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

30025..30609
DNA (585bp) protein (195aa)
Tat pathway signal sequence domain-containing protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MH69_RHOM4
Tat pathway signal sequence domain-containing protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Tat pathway signal sequence domain-containing protein
Displaying items 1-30 of 40 in total

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