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13_1_40cm_4_scaffold_5071

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5071_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..350)
DNA (348bp) protein (116aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glpC; hypothetical protein id=14631323 bin=bin9_gal15 species=Hyphomicrobium zavarzinii genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
hypothetical protein
13_1_40cm_4_scaffold_5071_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(347..1348)
DNA (1002bp) protein (334aa)
Lysine/arginine/ornithine transport system kinase (EC:2.7.-.-); K07588 LAO/AO transport system kinase [EC:2.7.-.-] id=14627523 bin=bin7_NC10_sister species=Thermococcus sibiricus genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lysine arginine ornithine transport system kinase
13_1_40cm_4_scaffold_5071_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1335..2024)
DNA (690bp) protein (230aa)
id=2982089 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=2982089 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_5071_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(2075..2539)
DNA (465bp) protein (155aa)
Cytochrome c, class II n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMV7_9PROT
cytochrome C Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
cytochrome C
13_1_40cm_4_scaffold_5071_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(2602..3474)
DNA (873bp) protein (291aa)
cytochrome c n=1 Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI0002893947
diheme cytochrome C-type Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
cytochrome c
13_1_40cm_4_scaffold_5071_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3497..3994)
DNA (498bp) protein (166aa)
ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rimI; ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128] id=14627522 bin=bin7_NC10_sister species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ribosomal-protein-alanine acetyltransferase
13_1_40cm_4_scaffold_5071_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3975..4649)
DNA (675bp) protein (225aa)
peptidase M22, glycoprotease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptidase M22, glycoprotease id=14627521 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M22, glycoprotease
13_1_40cm_4_scaffold_5071_8
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

4721..5407
DNA (687bp) protein (229aa)
Orotate phosphoribosyltransferase (OPRT) (OPRTase) (EC:2.4.2.10) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Orotate phosphoribosyltransferase (OPRT) (OPRTase) (EC:2.4.2.10)
Putative Orotate phosphoribosyltransferase (OPRT) (OPRTase) id=3366422 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_5071_9
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5528..6280
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EGI1_GEOBB
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
hypothetical protein
13_1_40cm_4_scaffold_5071_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(6415..8232)
DNA (1818bp) protein (606aa)
cobalamin B12-binding/Radical SAM family protein id=14627517 bin=bin7_NC10_sister species=Leptospirillum ferriphilum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
cobalamin B12-binding/Radical SAM family protein Tax=CSP1_6_Rokubacteria
cobalamin B12-binding/Radical SAM family
13_1_40cm_4_scaffold_5071_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8599..9120)
DNA (522bp) protein (174aa)
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Transcriptional repressor NrdR id=3366426 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nrdR; transcriptional regulator NrdR
13_1_40cm_4_scaffold_5071_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9134..10381)
DNA (1248bp) protein (416aa)
glyA; Serine hydroxymethyltransferase (glyA) (EC:2.1.2.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Serine hydroxymethyltransferase id=4621854 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glyA; serine hydroxymethyltransferase
13_1_40cm_4_scaffold_5071_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10365..10823)
DNA (459bp) protein (153aa)
RpiB/LacA/LacB family sugar-phosphate isomerase (EC:5.3.1.6); K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] Tax=GWA2_Rokubacteria_73_35_curated
ribose 5-phosphate isomerase B (EC:5.3.1.6)
Sugar-phosphate isomerase, RpiB/LacA/LacB family id=4621857 bin=GWA2_Methylomirabilis_73_35 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_5071_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10916..11464)
DNA (549bp) protein (183aa)
glucosamine/galactosamine-6-phosphate isomerase (EC:3.5.99.6); K02564 glucosamine-6-phosphate deaminase [EC:3.5.99.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glucosamine-6-phosphate isomerase; K02564 glucosamine-6-phosphate deaminase [EC:3.5.99.6] id=14626778 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
glucosamine-6-phosphate isomerase
13_1_40cm_4_scaffold_5071_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11599..12741)
DNA (1143bp) protein (381aa)
beta-lactamase; K07576 metallo-beta-lactamase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative exonuclease of the beta-lactamase fold involved in RNA processing id=4153929 bin=GWC2_Methylomirabilis_70_16 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_5071_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(12939..14144)
DNA (1206bp) protein (402aa)
thiI; thiamine biosynthesis protein thiI Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Probable tRNA sulfurtransferase id=4621862 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiI; thiamine biosynthesis protein thiI
13_1_40cm_4_scaffold_5071_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14151..14924)
DNA (774bp) protein (258aa)
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
Putative uncharacterized protein id=3877311 bin=GWF2_Methylomirabilis_70_14 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histone deacetylase
13_1_40cm_4_scaffold_5071_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14924..15514)
DNA (591bp) protein (197aa)
molybdopterin-guanine dinucleotide biosynthesis protein A Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Molybdenum cofactor guanylyltransferase id=4621961 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formate dehydrogenase family accessory protein FdhD
13_1_40cm_4_scaffold_5071_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(15518..16039)
DNA (522bp) protein (174aa)
translation factor; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=GWA2_Rokubacteria_70_23_curated
Putative translation factor id=3389047 bin=GWC2_Methylomirabilis_70_24 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
SUA5; putative translation factor
13_1_40cm_4_scaffold_5071_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16151..16696)
DNA (546bp) protein (182aa)
hypothetical protein; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSV9_9FIRM
13_1_40cm_4_scaffold_5071_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16668..17939)
DNA (1272bp) protein (424aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phosphoribosylamine/glycine ligase (EC:4.1.1.21 6.3.4.13)
Phosphoribosylamine--glycine ligase id=4153918 bin=GWC2_Methylomirabilis_70_16 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_5071_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17936..18619)
DNA (684bp) protein (228aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Tetratricopeptide TPR_2 repeat protein id=3389043 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Displaying 22 items

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