ggKbase home page

13_1_40cm_4_scaffold_5622

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5622_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..770)
DNA (768bp) protein (256aa)
Putative peptide ABC transporter permease protein id=4119974 bin=GWF2_Methylomirabilis_70_14 species=uncultured marine bacterium MedDCM-OCT-S11-C95 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uncharacterized LOC100637730 Tax=GWA2_Rokubacteria_70_23_curated
gsiD; glutathione transport system permease GsiD
13_1_40cm_4_scaffold_5622_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(770..1723)
DNA (954bp) protein (318aa)
Putative peptide ABC transporter permease protein id=4119975 bin=GWF2_Methylomirabilis_70_14 species=uncultured marine bacterium MedDCM-OCT-S11-C95 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gsiC; glutathione transport system permease GsiC; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
dipeptide transport system permease DppB
13_1_40cm_4_scaffold_5622_3
unknown

Not on your lists

comp(1737..1874)
DNA (138bp) protein (46aa)

This feature has no annotations

13_1_40cm_4_scaffold_5622_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1880..3514)
DNA (1635bp) protein (545aa)
Probable ABC transporter substrate binding protein id=3960026 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_5622_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3652..4632)
DNA (981bp) protein (327aa)
oligopeptide transport ATP-binding protein AppF-like Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Uncharacterized protein id=3960025 bin=GWA2_Methylomirabilis_73_35 species=Amphimedon queenslandica genus=Amphimedon taxon_order=Haplosclerida taxon_class=Demospongiae phylum=Porifera tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide/dipeptide ABC transporter ATPase
13_1_40cm_4_scaffold_5622_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4629..5693)
DNA (1065bp) protein (355aa)
peptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative ABC transporter id=3960022 bin=GWA2_Methylomirabilis_73_35 species=uncultured marine microorganism HF4000_010I05 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_5622_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5750..7006)
DNA (1257bp) protein (419aa)
group 1 glycosyl transferase; K15521 D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
putative glycosyltransferase (EC:2.4.-.-)
Glycosyl transferase group 1 id=3962070 bin=GWC2_Methylomirabilis_70_24 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_5622_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7003..7983)
DNA (981bp) protein (327aa)
cellulose biosynthesis (CelD)-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3960018 bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_5622_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8013..8270)
DNA (258bp) protein (86aa)
regulatory protein, FmdB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
regulatory protein, FmdB id=14627732 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
FmdB family regulatory protein
13_1_40cm_4_scaffold_5622_10
unknown

Not on your lists

8565..8783
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_40cm_4_scaffold_5622_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8749..9774)
DNA (1026bp) protein (342aa)
putative methyltransferase (EC:2.1.1.-) Tax=GWA2_Rokubacteria_70_23_curated
putative methyltransferase (EC:2.1.1.-)
Putative Methyltransferase id=4334341 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_5622_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9771..10787)
DNA (1017bp) protein (339aa)
glycosyl transferase group 1 protein Tax=GWA2_Rokubacteria_73_35_curated
Glycosyl transferase group 1 id=4836217 bin=GWC2_Methylomirabilis_70_16 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
glycosyl transferase group 1 protein
13_1_40cm_4_scaffold_5622_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(10795..11646)
DNA (852bp) protein (284aa)
thiamine pyrophosphate protein central region; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=CSP1_6_Rokubacteria
thiamine pyrophosphate protein central region; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] id=14625868 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
thiamine pyrophosphate protein central region
13_1_40cm_4_scaffold_5622_14
unknown

Not on your lists

12009..12266
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_4_scaffold_5622_15
unknown

Not on your lists

12893..13144
DNA (252bp) protein (84aa)

This feature has no annotations

13_1_40cm_4_scaffold_5622_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13346..15406)
DNA (2061bp) protein (687aa)
short chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase id=3960006 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
13_1_40cm_4_scaffold_5622_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15424..16260
DNA (837bp) protein (279aa)
serine/threonine-protein kinase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625845 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
serine/threonine-protein kinase-like protein
13_1_40cm_4_scaffold_5622_18
unknown

Not on your lists

16257..16448
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_4_scaffold_5622_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16429..16821
DNA (393bp) protein (131aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_5622_20
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16964..18187
DNA (1224bp) protein (408aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Putative uncharacterized protein id=2259308 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_5622_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18194..18469
DNA (276bp) protein (92aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Binding-protein-dependent transport systems inner membrane component id=2259310 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
Displaying 21 items

View Taxonomy