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13_1_40cm_4_scaffold_6754

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_6754_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..971)
DNA (969bp) protein (323aa)
putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=GWA2_Rokubacteria_73_35_curated
Phosphate acyltransferase id=2547032 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative glycerol-3-phosphate acyltransferase PlsX
13_1_40cm_4_scaffold_6754_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(992..1174)
DNA (183bp) protein (61aa)
rpmF; 50S ribosomal protein L32 RpmF Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L32 id=4343491 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmF; 50S ribosomal protein L32 RpmF
13_1_40cm_4_scaffold_6754_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1185..1694)
DNA (510bp) protein (170aa)
Putative uncharacterized protein id=4343489 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K07040 uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_6754_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1822..2673
DNA (852bp) protein (284aa)
peptidase M48, Ste24p; K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
endopeptidase htpX (EC:3.4.24.-); K03799 heat shock protein HtpX [EC:3.4.24.-] id=14625131 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
htpX-1; membrane-bound zinc-dependent protease HtpX
13_1_40cm_4_scaffold_6754_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2688..4424)
DNA (1737bp) protein (579aa)
Oligopeptide ABC transporter periplasmic oligopeptide-binding protein id=3741107 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter periplasmic oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
family 5 extracellular solute-binding protein
13_1_40cm_4_scaffold_6754_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4440..5417)
DNA (978bp) protein (326aa)
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein Tax=GWC2_Rokubacteria_70_16_curated
Binding-protein-dependent transport systems inner membrane component id=3741106 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_6754_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5386..6312)
DNA (927bp) protein (309aa)
Binding-protein-dependent transport systems inner membrane component id=3980008 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
binding-protein-dependent transport system inner membrane protein; K15581 oligopeptide transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_6754_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6460..7179
DNA (720bp) protein (240aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4343485 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heme exporter protein CcmA
13_1_40cm_4_scaffold_6754_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7173..7853
DNA (681bp) protein (227aa)
Cytochrome c-type biogenesis protein CcmB id=4343483 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Heme exporter, protein B Tax=GWA2_Rokubacteria_73_35_curated
Heme exporter, protein B
13_1_40cm_4_scaffold_6754_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7860..8504
DNA (645bp) protein (215aa)
Heme ABC transporter (Heme exporter protein C), permease protein (Cytochrome c biogenesis) id=4343481 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccmC; heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis) Tax=GWA2_Rokubacteria_73_35_curated
ccmC; heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis)
13_1_40cm_4_scaffold_6754_11
unknown

Not on your lists

8504..8758
DNA (255bp) protein (85aa)

This feature has no annotations

13_1_40cm_4_scaffold_6754_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8755..9201
DNA (447bp) protein (149aa)
ccmE; cytochrome c-type biogenesis protein CcmE Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ccmE; cytochrome c-type biogenesis protein CcmE id=14625136 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ccmE; cytochrome c-type biogenesis protein CcmE
13_1_40cm_4_scaffold_6754_13
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

9198..9482
DNA (285bp) protein (95aa)
cycK; cytochrome c-type biogenesis protein cycK Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
cycK; cytochrome c-type biogenesis protein cycK id=14625137 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
cytochrome C biogenesis protein
13_1_40cm_4_scaffold_6754_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9461..11101
DNA (1641bp) protein (547aa)
cycK; cytochrome c-type biogenesis protein cycK Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cycK; cytochrome c-type biogenesis protein cycK id=14625137 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
cycK; cytochrome c-type biogenesis protein cycK
13_1_40cm_4_scaffold_6754_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11098..11634
DNA (537bp) protein (179aa)
ccmG; periplasmic thioredoxin (cytochrome c biogenesis) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Periplasmic thioredoxin (Cytochrome c biogenesis) id=4062402 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccmG; periplasmic thioredoxin (cytochrome c biogenesis)
13_1_40cm_4_scaffold_6754_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11631..12101
DNA (471bp) protein (157aa)
cycL; cytochrome c-type biogenesis protein cycL Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c-type biogenesis protein cycL id=4062401 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cycL; cytochrome c-type biogenesis protein cycL
13_1_40cm_4_scaffold_6754_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12139..13050
DNA (912bp) protein (304aa)
cytochrome c family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cytochrome c family protein id=4062400 bin=GWF2_Methylomirabilis_70_14 species=Thermus scotoductus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_6754_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13066..13422)
DNA (357bp) protein (119aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_1_40cm_4_scaffold_6754_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13419..14132)
DNA (714bp) protein (238aa)
DtxR family iron dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iron dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator id=14625222 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
DtxR family iron dependent repressor
13_1_40cm_4_scaffold_6754_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14290..16176
DNA (1887bp) protein (629aa)
ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) (EC:6.5.1.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) (EC:6.5.1.2)
DNA ligase id=4590835 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_6754_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16235..17191
DNA (957bp) protein (319aa)
Kelch repeat-containing protein id=3960133 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Kelch repeat-containing protein Tax=GWA2_Rokubacteria_73_35_curated
Kelch repeat-containing protein
13_1_40cm_4_scaffold_6754_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17188..17847
DNA (660bp) protein (220aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide TPR_2 id=3960130 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_6754_23
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

17847..17951
DNA (105bp) protein (35aa)
Probable transferase protein id=4424806 bin=GWC2_Methylomirabilis_70_24 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative transferase protein Tax=GWA2_Rokubacteria_70_23_curated
Displaying 23 items

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