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13_1_40cm_4_scaffold_780

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_780_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(95..964)
DNA (870bp) protein (290aa)
Thioesterase superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thioesterase superfamily protein id=5020384 bin=GWA2_Methylomirabilis_73_35 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_780_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

979..2160
DNA (1182bp) protein (394aa)
transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member id=4165967 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member
13_1_40cm_4_scaffold_780_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2206..2745
DNA (540bp) protein (180aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=5020386 bin=GWA2_Methylomirabilis_73_35 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_780_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2751..3692
DNA (942bp) protein (314aa)
pan; proteasome-activating nucleotidase; K03420 proteasome regulatory subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Proteasome-activating nucleotidase id=4165965 bin=GWF2_Methylomirabilis_70_14 species=Thermosphaera aggregans genus=Thermosphaera taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
proteasome-activating nucleotidase
13_1_40cm_4_scaffold_780_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3758..4741
DNA (984bp) protein (328aa)
ABC transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter id=14626741 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ABC transporter
13_1_40cm_4_scaffold_780_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4738..5505
DNA (768bp) protein (256aa)
multi-copper enzyme maturation ABC transporter permease Tax=GWA2_Rokubacteria_73_35_curated
multi-copper enzyme maturation ABC transporter permease id=14626740 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-copper enzyme maturation ABC transporter permease
13_1_40cm_4_scaffold_780_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5502..7025
DNA (1524bp) protein (508aa)
gliding motility ABC transporter auxillary protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like id=4034167 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gliding motility ABC transporter auxillary protein
13_1_40cm_4_scaffold_780_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7036..8802
DNA (1767bp) protein (589aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4034165 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_780_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9006..9707
DNA (702bp) protein (234aa)
Beta-lactamase-like Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Beta-lactamase-like id=4034158 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Beta-lactamase-like
13_1_40cm_4_scaffold_780_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9756..10421)
DNA (666bp) protein (222aa)
oxidoreductase, short chain dehydrogenase/reductase family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Short-chain dehydrogenase/reductase SDR id=4034156 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_780_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10483..11088
DNA (606bp) protein (202aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626734 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_780_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(11130..11774)
DNA (645bp) protein (215aa)
hypothetical protein; K07018 id=14626733 bin=bin7_NC10_sister species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K07018 Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_780_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11813..12319
DNA (507bp) protein (169aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=4034151 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_780_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12545..13501)
DNA (957bp) protein (319aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=4034149 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_780_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(13453..14043)
DNA (591bp) protein (197aa)
OmpA/MotB domain protein id=4034147 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB domain protein Tax=GWC2_Rokubacteria_70_16_curated
peptidoglycan-associated lipoprotein
13_1_40cm_4_scaffold_780_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14094..15425)
DNA (1332bp) protein (444aa)
tolB protein; K03641 TolB protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
WD40 domain-containing protein; K03641 TolB protein id=14626728 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
biopolymer transport TolB-like protein
13_1_40cm_4_scaffold_780_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15429..16244)
DNA (816bp) protein (272aa)
TonB family protein id=4034141 bin=GWA2_Methylomirabilis_73_35 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TonB family protein Tax=GWA2_Rokubacteria_73_35_curated
putative periplasmic protein TonB
13_1_40cm_4_scaffold_780_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16266..16607)
DNA (342bp) protein (114aa)
tolR; protein TolR; K03560 biopolymer transport protein TolR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tolR; protein TolR; K03560 biopolymer transport protein TolR id=14626726 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
tolR protein
13_1_40cm_4_scaffold_780_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17286..18152
DNA (867bp) protein (289aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=2773093 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_780_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18152..18904
DNA (753bp) protein (251aa)
beta-lactamase domain-containing protein; K00784 ribonuclease Z [EC:3.1.26.11] Tax=GWA2_Rokubacteria_73_35_curated
Beta-lactamase domain protein id=4489512 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
beta-lactamase domain-containing protein
13_1_40cm_4_scaffold_780_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18876..19448)
DNA (573bp) protein (191aa)
DNA-3-methyladenine glycosylase; K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative 3-methyladenine DNA glycosylase id=2773084 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-3-methyladenine glycosylase
13_1_40cm_4_scaffold_780_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19449..20672)
DNA (1224bp) protein (408aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1] Tax=GWA2_Rokubacteria_73_35_curated
threonine synthase; K01733 threonine synthase [EC:4.2.3.1] id=14626721 bin=bin7_NC10_sister species=Frankia sp. QA3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
threonine synthase
13_1_40cm_4_scaffold_780_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20669..21697)
DNA (1029bp) protein (343aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=2817611 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_780_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21743..22501
DNA (759bp) protein (253aa)
binding-protein-dependent transporter inner membrane component family protein 65; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Abc transporter permease protein id=2817372 bin=GWC2_Methylomirabilis_70_16 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter permease
13_1_40cm_4_scaffold_780_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22579..23586
DNA (1008bp) protein (336aa)
membrane lipoprotein lipid attachment site; K02051 NitT/TauT family transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Membrane lipoprotein lipid attachment site id=2817368 bin=GWC2_Methylomirabilis_70_16 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
membrane lipoprotein lipid attachment site
13_1_40cm_4_scaffold_780_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23583..24347
DNA (765bp) protein (255aa)
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter-like protein id=2817364 bin=GWC2_Methylomirabilis_70_16 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter
13_1_40cm_4_scaffold_780_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24413..25465)
DNA (1053bp) protein (351aa)
Putative uncharacterized protein id=2773068 bin=GWA2_Methylomirabilis_73_35 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dihydroorotate dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
dihydroorotate dehydrogenase
13_1_40cm_4_scaffold_780_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(25538..26527)
DNA (990bp) protein (330aa)
Luciferase-like, subgroup Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Luciferase family protein id=2817356 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Luciferase-like, subgroup
13_1_40cm_4_scaffold_780_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

26626..26991
DNA (366bp) protein (122aa)
cupin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cupin_2 domain containing protein id=2773060 bin=GWA2_Methylomirabilis_73_35 species=Pyrobaculum sp. 1860 genus=Pyrobaculum taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cupin
13_1_40cm_4_scaffold_780_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

27227..28846
DNA (1620bp) protein (540aa)
putative thymidylate synthase (EC:2.1.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
putative thymidylate synthase (EC:2.1.1.-)
Thymidylate synthase complementing protein ThyX id=2773055 bin=GWA2_Methylomirabilis_73_35 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 41 in total

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