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13_1_40cm_4_scaffold_857

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_857_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1..672)
DNA (672bp) protein (224aa)
formyl-CoA transferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Acyl-CoA synthase id=4748146 bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_857_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(672..1559)
DNA (888bp) protein (296aa)
Putative uncharacterized protein id=4748154 bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
abhydrolase 1 Tax=GWA2_Rokubacteria_70_23_curated
abhydrolase 1
13_1_40cm_4_scaffold_857_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1569..2030)
DNA (462bp) protein (154aa)
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcription elongation factor GreA; K03624 transcription elongation factor GreA id=14625338 bin=bin7_NC10_sister species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
greA; transcription elongation factor GreA
13_1_40cm_4_scaffold_857_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2218..2439)
DNA (222bp) protein (74aa)
30S ribosomal protein S21 id=4327962 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 Tax=GWA2_Rokubacteria_73_35_curated
30S ribosomal protein S21
13_1_40cm_4_scaffold_857_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(2659..2994)
DNA (336bp) protein (112aa)
RNP-1 like RNA-binding protein id=4077037 bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RNP-1 like RNA-binding protein Tax=GWC2_Rokubacteria_70_16_curated
RNA-binding proteins (RRM domain)
13_1_40cm_4_scaffold_857_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3150..5045)
DNA (1896bp) protein (632aa)
peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidylprolyl cis-trans isomerase, putative id=4433399 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_857_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5052..5891)
DNA (840bp) protein (280aa)
tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36); K07442 tRNA (adenine57-N1/adenine58-N1)-methyltransferase [EC:2.1.1.219 2.1.1.220] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
tRNA (Adenine-N(1)-)-methyltransferase id=4549106 bin=GWA2_Methylomirabilis_73_35 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA (adenine-N(1)-)-methyltransferase
13_1_40cm_4_scaffold_857_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5888..7114)
DNA (1227bp) protein (409aa)
major facilitator transporter; K08223 MFS transporter, FSR family, fosmidomycin resistance protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
fosmidomycin resistance protein; K08223 MFS transporter, FSR family, fosmidomycin resistance protein id=14625329 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator transporter
13_1_40cm_4_scaffold_857_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

7785..8195
DNA (411bp) protein (137aa)
CMP/dCMP deaminase zinc-binding n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NMJ4_ROSCS
CMP/dCMP deaminase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
CMP/dCMP deaminase
13_1_40cm_4_scaffold_857_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8232..9032)
DNA (801bp) protein (267aa)
putative CheY-like response regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Multi-sensor hybrid histidine kinase id=4549114 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver
13_1_40cm_4_scaffold_857_11
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(9076..10248)
DNA (1173bp) protein (391aa)
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] id=14428654 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin3_NC10 organism_group=NC10
acyl-CoA dehydrogenase
13_1_40cm_4_scaffold_857_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10252..10758)
DNA (507bp) protein (169aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_857_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10760..11419)
DNA (660bp) protein (220aa)
hypothetical protein; K09125 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Hypothetical conserved protein id=4453409 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_857_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11585..12994)
DNA (1410bp) protein (470aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625321 bin=bin7_NC10_sister species=Smithella sp. ME-1 genus=Smithella taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_857_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13006..14019)
DNA (1014bp) protein (338aa)
PDZ/DHR/GLGF domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PDZ/DHR/GLGF domain protein id=3234512 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative serine protease
13_1_40cm_4_scaffold_857_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14036..15034)
DNA (999bp) protein (333aa)
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
dTDP-glucose 4,6-dehydratase id=3234516 bin=GWA2_Methylomirabilis_73_35 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dTDP-glucose 4,6-dehydratase
13_1_40cm_4_scaffold_857_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(15039..15575)
DNA (537bp) protein (179aa)
putative dTDP-4-dehydrorhamnose 3,5-epimerase; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative dTDP-4-dehydrorhamnose 3,5-epimerase id=3234518 bin=GWA2_Methylomirabilis_73_35 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative dTDP-4-dehydrorhamnose 3,5-epimerase
13_1_40cm_4_scaffold_857_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15590..16474)
DNA (885bp) protein (295aa)
glucose-1-phosphate thymidylyltransferase; K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] Tax=GWA2_Rokubacteria_73_35_curated
Glucose-1-phosphate thymidylyltransferase id=3234520 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glucose-1-phosphate thymidylyltransferase
13_1_40cm_4_scaffold_857_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

16571..17491
DNA (921bp) protein (307aa)
moeB1; molybdopterin biosynthesis protein MoeB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Molybdopterin biosynthesis protein MoeB id=3234522 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
moeB1; molybdopterin biosynthesis protein MoeB
13_1_40cm_4_scaffold_857_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

17513..17797
DNA (285bp) protein (95aa)
UBA/THIF-type NAD/FAD binding domain-containing protein; K11996 adenylyltransferase and sulfurtransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
UBA/THIF-type NAD/FAD binding protein id=4341246 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UBA/THIF-type NAD/FAD binding protein
13_1_40cm_4_scaffold_857_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17949..18521)
DNA (573bp) protein (191aa)
hypothetical protein id=3234528 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_857_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18865..19236
DNA (372bp) protein (124aa)
Putative uncharacterized protein id=3234529 bin=GWA2_Methylomirabilis_73_35 species=uncultured marine microorganism HF4000_ANIW141A21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_857_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19237..20382)
DNA (1146bp) protein (382aa)
trypsin-like serine protease; K01362 [EC:3.4.21.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Periplasmic trypsin-like serine protease DegP id=2732483 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
degP; periplasmic trypsin-like serine protease DegP
13_1_40cm_4_scaffold_857_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20572..20721)
DNA (150bp) protein (50aa)
moaB; molybdenum cofactor biosynthesis protein B; K03638 molybdenum cofactor biosynthesis protein B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Molybdenum cofactor biosynthesis protein B id=2732488 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdenum cofactor synthesis domain-containing protein
Displaying 24 items

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