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13_1_40cm_4_scaffold_944

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_944_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..726)
DNA (726bp) protein (242aa)
binding-protein-dependent transporters inner membrane component; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Binding-protein-dependent transport systems inner membrane component id=3820149 bin=GWC2_Methylomirabilis_70_16 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_944_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(998..1915)
DNA (918bp) protein (306aa)
Dipeptide transport system permease DppB id=4526369 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter permease
13_1_40cm_4_scaffold_944_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1912..3285)
DNA (1374bp) protein (458aa)
RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] Tax=GWA2_Rokubacteria_73_35_curated
RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] id=14627050 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
RNA methyltransferase
13_1_40cm_4_scaffold_944_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3370..5541
DNA (2172bp) protein (724aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide repeat family protein id=4526378 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_944_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5558..6283
DNA (726bp) protein (242aa)
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=4526381 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_944_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6350..7081
DNA (732bp) protein (244aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase id=4526385 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
13_1_40cm_4_scaffold_944_trna_1
unknown

Not on your lists

7310..7382
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_944_7
unknown

Not on your lists

comp(7392..7613)
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_40cm_4_scaffold_944_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


8495..9070
DNA (576bp) protein (192aa)
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 id=14627044 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
13_1_40cm_4_scaffold_944_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9122..9634
DNA (513bp) protein (171aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=GWA2_Rokubacteria_73_35_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase id=4785576 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_944_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9641..10888)
DNA (1248bp) protein (416aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Transporter, UIT6 family id=4785574 bin=GWA2_Methylomirabilis_73_35 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_944_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10993..11187
DNA (195bp) protein (65aa)
30S ribosomal protein S21 id=4785572 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsU; 30S ribosomal protein S21 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rpsU; 30S ribosomal protein S21
13_1_40cm_4_scaffold_944_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11253..13652
DNA (2400bp) protein (800aa)
MutS2 family protein; K07456 DNA mismatch repair protein MutS2 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
MutS2 protein id=3357842 bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
mismatch repair ATPase
13_1_40cm_4_scaffold_944_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13652..15517
DNA (1866bp) protein (622aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA primase id=4785564 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA primase
13_1_40cm_4_scaffold_944_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

15514..17331
DNA (1818bp) protein (606aa)
RNA polymerase sigma factor RpoD id=3357851 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=GWC2_Rokubacteria_70_16_curated
RpoD subfamily RNA polymerase sigma-70 subunit
13_1_40cm_4_scaffold_944_trna_2
unknown

Not on your lists

17371..17442
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_944_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17654..18367
DNA (714bp) protein (238aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14627037 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_944_16
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18502..18834
DNA (333bp) protein (111aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00
Ribonuclease H n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I5L6_DESAP
ribonuclease H
13_1_40cm_4_scaffold_944_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

18949..20010
DNA (1062bp) protein (354aa)
Uncharacterized protein id=4217956 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_944_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20560..22620
DNA (2061bp) protein (687aa)
GAF sensor hybrid histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Multi-sensor hybrid histidine kinase id=4736662 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GAF sensor hybrid histidine kinase
13_1_40cm_4_scaffold_944_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22722..23741
DNA (1020bp) protein (340aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
mreB; Rod shape-determining protein mreB id=14626892 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rod shape-determining protein MreB
13_1_40cm_4_scaffold_944_20
unknown

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23794..24081
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_4_scaffold_944_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(25061..26641)
DNA (1581bp) protein (527aa)
h16_A2949; ABC transporter periplasmic protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2949; ABC transporter periplasmic protein
13_1_40cm_4_scaffold_944_22
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26851..27996)
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003750DFF
Uncharacterized protein {ECO:0000313|EMBL:ETW98117.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
luciferase
13_1_40cm_4_scaffold_944_23
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27993..29225)
DNA (1233bp) protein (411aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AS94_RUBXD
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ABG05734.1}; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacte
13_1_40cm_4_scaffold_944_24
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29225..29533)
DNA (309bp) protein (103aa)
Rieske (2Fe-2S) region n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AS95_RUBXD
Rieske (2Fe-2S) domain-containing protein
Rieske (2Fe-2S) region {ECO:0000313|EMBL:ABG05733.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubroba
13_1_40cm_4_scaffold_944_25
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29669..30526)
DNA (858bp) protein (286aa)
lipase (EC:3.1.1.3) Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Uncharacterized protein n=1 Tax=Emiliania huxleyi CCMP1516 RepID=R1CRS3_EMIHU
alpha/beta hydrolase fold-3 domain-containing protein
13_1_40cm_4_scaffold_944_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(30670..31713)
DNA (1044bp) protein (348aa)
luciferase-like monooxygenase Tax=GWA2_Rokubacteria_73_35_curated
luciferase-like monooxygenase id=4793474 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase-like monooxygenase
13_1_40cm_4_scaffold_944_27
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(31774..33936)
DNA (2163bp) protein (721aa)
putative hybrid sensor histidine kinase (EC:2.7.13.3)
PAS/PAC sensor hybrid histidine kinase id=2475293 bin=GWC2_Methylomirabilis_70_16 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
signal transduction histidine kinase, nitrogen specific, NtrB Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_944_28
Bacillus methanolicus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33970..34962
DNA (993bp) protein (331aa)
ABC transporter substrate-binding protein n=1 Tax=Bacillus methanolicus MGA3 RepID=I3EC96_BACMT
ytlA; Putative binding protein YtlA
Putative binding protein YtlA {ECO:0000313|EMBL:AIE61108.1}; TaxID=796606 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus methanolicus MGA3.;"
Displaying 30 items

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