ggKbase home page

13_1_40cm_4_scaffold_4549

Search features with annotation key words

Displaying 30 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4549_1
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

1..294
DNA (294bp) protein (98aa)
thiN; thiamine pyrophosphokinase (EC:2.7.6.2); K00949 thiamine pyrophosphokinase [EC:2.7.6.2] Tax=RBG_16_Actinobacteria_67_10_curated
thiamine pyrophosphokinase; K00949 thiamine pyrophosphokinase [EC:2.7.6.2] id=14629731 bin=bin8_Chloro species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
thiamine pyrophosphokinase
13_1_40cm_4_scaffold_4549_2
Jonesia denitrificans, Jonesia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

681..884
DNA (204bp) protein (68aa)
YKOF domain protein {ECO:0000313|EMBL:ACV07764.1}; TaxID=471856 species="Bacteria; Actinobacteria; Micrococcales; Jonesiaceae; Jonesia.;" source="Jonesia denitrificans (strain ATCC 14870 / DSM 20603 /
hypothetical protein
13_1_40cm_4_scaffold_4549_3
Salimicrobium jeotgali, Salimicrobium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

886..1995
DNA (1110bp) protein (370aa)
Thiamine transporter permease n=1 Tax=Salimicrobium sp. MJ3 RepID=K2FM17_9BACI
Thiamine transporter permease {ECO:0000313|EMBL:EKE32006.1}; TaxID=1230341 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Salimicrobium.;" source="Salimicrobium jeotgali.;"
hypothetical protein
13_1_40cm_4_scaffold_4549_4
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1992..3653
DNA (1662bp) protein (554aa)
Putative HMP/thiamine import ATP-binding protein YkoD {ECO:0000313|EMBL:KJL33552.1}; EC=3.6.3.- {ECO:0000313|EMBL:KJL33552.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbact
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KZ76_9MICO
cobalt ABC transporter ATPase
13_1_40cm_4_scaffold_4549_5
RBG_13_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

3650..4426
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI00030F5373
hypothetical protein Tax=RBG_13_Chloroflexi_56_8_curated
cobalt transport protein
13_1_40cm_4_scaffold_4549_6
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(4458..4610)
DNA (153bp) protein (51aa)
id=24557403 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
id=24557403 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_4_scaffold_4549_7
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(4710..5003)
DNA (294bp) protein (98aa)
id=24557402 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
id=24557402 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_4_scaffold_4549_8
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

5376..5741
DNA (366bp) protein (122aa)
Putative ribonuclease VapC id=4290391 bin=GWC2_Chloroflexi_73_18 species=Thermococcus sp. AM4 genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
PIN domain-containing protein; K07062 Tax=GWC2_RIF_CHLX_73_18_curated
PIN domain-containing protein
13_1_40cm_4_scaffold_4549_9
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6110..6394)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Hahella ganghwensis RepID=UPI00035DC582
Uncharacterized protein {ECO:0000313|EMBL:ETW99404.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
13_1_40cm_4_scaffold_4549_10
Mycobacterium canettii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6394..6552)
DNA (159bp) protein (53aa)
Hypothetical alanine and proline rich protein {ECO:0000313|EMBL:CCC46254.1}; TaxID=1048245 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tubercul
hypothetical protein
13_1_40cm_4_scaffold_4549_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(6808..7476)
DNA (669bp) protein (223aa)
two component transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Putative two-component system response regulator id=3034874 bin=GWC2_Chloroflexi_73_18 species=Streptomyces griseoaurantiacus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
winged helix family two component transcriptional regulator
13_1_40cm_4_scaffold_4549_12
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(7473..9125)
DNA (1653bp) protein (551aa)
Signal transduction histidine kinase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NSC1_ROSCS
His Kinase A (phosphoacceptor) domain protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
signal transduction histidine kinase
13_1_40cm_4_scaffold_4549_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

9188..10117
DNA (930bp) protein (310aa)
ABC transporter related n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5V245_ROSS1
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
ABC transporter-like protein
13_1_40cm_4_scaffold_4549_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

10114..10929
DNA (816bp) protein (272aa)
ABC-2 type transporter Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
ABC-2 type transporter id=14629483 bin=bin8_Chloro species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
ABC-2 type transporter
13_1_40cm_4_scaffold_4549_15
unknown

Not on your lists

comp(11622..11846)
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_40cm_4_scaffold_4549_16
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(12150..13829)
DNA (1680bp) protein (560aa)
Beta-lactamase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAH8_SPHTD
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ACZ40821.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaer
13_1_40cm_4_scaffold_4549_17
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(13864..14202)
DNA (339bp) protein (113aa)
Endoribonuclease YbeY n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WY33_ALIAD
hypothetical protein; K07042 probable rRNA maturation factor Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein
13_1_40cm_4_scaffold_4549_18
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(14299..16398)
DNA (2100bp) protein (700aa)
7TM receptor with intracellular metal dependent phosphohydrolase; K07037 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
7TM receptor with intracellular metal dependent phosphohydrolase id=3858482 bin=GWC2_Chloroflexi_73_18 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
7TM receptor with intracellular metal dependent phosphohydrolase
13_1_40cm_4_scaffold_4549_19
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(16395..18614)
DNA (2220bp) protein (740aa)
hypothetical protein n=1 Tax=Myxococcus xanthus RepID=UPI000347DEDA
phoL; phoH-like protein; K06217 phosphate starvation-inducible protein PhoH and related proteins Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
helicase, ATP-dependent, intein-containing
13_1_40cm_4_scaffold_4549_20
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(18611..19102)
DNA (492bp) protein (164aa)
GatB/YqeY domain protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NRW6_ROSCS
GatB/YqeY domain-containing protein
GatB/YqeY domain protein {ECO:0000313|EMBL:ABU60312.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus ca
13_1_40cm_4_scaffold_4549_21
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(19183..19392)
DNA (210bp) protein (70aa)
30S ribosomal protein S21 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CB07_THET1
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
30S ribosomal protein S21
13_1_40cm_4_scaffold_4549_22
Selenomonas noxia, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(19395..19748)
DNA (354bp) protein (118aa)
Histidine triad (HIT) protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1V6_SPHTD
Histidine triad domain protein {ECO:0000313|EMBL:EFF65477.1}; TaxID=585503 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas noxia ATCC
histidine triad (HIT) protein
13_1_40cm_4_scaffold_4549_23
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19745..20173)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1A4A8_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:ERE11430.1}; TaxID=1388764 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulben
hypothetical protein
13_1_40cm_4_scaffold_4549_24
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20164..20934)
DNA (771bp) protein (257aa)
AMP-binding enzyme; K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=RBG_16_Deltaproteobacteria_48_10_curated
coenzyme F390 synthetase id=14624518 bin=bin5_DeltaP species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
putative Phenylacetate-coenzyme A ligase
13_1_40cm_4_scaffold_4549_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21331..22161)
DNA (831bp) protein (277aa)
Branched-chain amino acid ABC transporter ATPase id=1829170 bin=GWA2_Methylomirabilis_73_35 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
livF1; branched-chain amino acid ABC transporter ATPase; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter-like protein
13_1_40cm_4_scaffold_4549_26
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22125..23309)
DNA (1185bp) protein (395aa)
Extracellular ligand-binding receptor n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R8R0_AMMDK
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ACX52689.1}; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.
13_1_40cm_4_scaffold_4549_27
Bacillus azotoformans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23325..24383)
DNA (1059bp) protein (353aa)
Inner-membrane translocator n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UQZ4_ROSS1
inner-membrane translocator
Amino acid/amide ABC transporter membrane protein 2, HAAT family {ECO:0000313|EMBL:KEF38254.1}; TaxID=1348973 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacil
13_1_40cm_4_scaffold_4549_28
Bacillus sp. 2_A_57_CT2, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24376..25272)
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Bacillus sp. 2_A_57_CT2 RepID=E5WK32_9BACI
Uncharacterized protein {ECO:0000313|EMBL:EFV76948.1}; TaxID=665959 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. 2_A_57_CT2.;"
inner-membrane translocator
13_1_40cm_4_scaffold_4549_29
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25262..27160)
DNA (1899bp) protein (633aa)
AMP-dependent synthetase and ligase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R8R3_AMMDK
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACX52692.1}; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;"
13_1_40cm_4_scaffold_4549_30
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(27157..27987)
DNA (831bp) protein (277aa)
ABC transporter related n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UQZ1_ROSS1
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABQ89044.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp.
Displaying 30 items

View Taxonomy