ggKbase home page

13_1_40cm_4_scaffold_226

Search features with annotation key words

Displaying 27 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_226_1
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(3..3686)
DNA (3684bp) protein (1228aa)
Replicative DNA helicase n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VL64_9CYAN
replicative DNA helicase
Replicative DNA helicase {ECO:0000313|EMBL:AFZ07965.1}; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 71
13_1_40cm_4_scaffold_226_2

Not on your lists


comp(3699..4148)
DNA (450bp) protein (150aa)
50S ribosomal protein L9 n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B51FA2
50S ribosomal protein L9
Ribosomal protein L9 {ECO:0000313|EMBL:CBH76051.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
13_1_40cm_4_scaffold_226_3
unknown

Not on your lists

comp(4154..4564)
DNA (411bp) protein (137aa)

This feature has no annotations

13_1_40cm_4_scaffold_226_4
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

4632..5903
DNA (1272bp) protein (424aa)
Major facilitator superfamily MFS_1 Tax=RBG_16_Chloroflexi_63_12_curated
major facilitator superfamily protein id=24458890 bin=RBG_19FT_COMBO_GAL15_69_19 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
major facilitator superfamily protein
13_1_40cm_4_scaffold_226_5
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

6298..7827
DNA (1530bp) protein (510aa)
AMP-dependent synthetase and ligase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C738_SPHTD
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACZ37799.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobac
13_1_40cm_4_scaffold_226_6
unknown

Not on your lists

comp(7832..8455)
DNA (624bp) protein (208aa)

This feature has no annotations

13_1_40cm_4_scaffold_226_7
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(8617..9618)
DNA (1002bp) protein (334aa)
glpX; fructose 1,6-bisphosphatase II (EC:3.1.3.11) id=14430977 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
glpX; fructose 1,6-bisphosphatase II (EC:3.1.3.11) Tax=CSP1_5_NC10
fructose 1,6-bisphosphatase II
13_1_40cm_4_scaffold_226_8
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10115..10630)
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense (strain Y51) RepID=Q24SD5_DESHY
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAE85057.1}; TaxID=138119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium
13_1_40cm_4_scaffold_226_9
Tannerella sp. oral taxon BU063, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10716..12098)
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:831 RepID=R5I568_9BACT
tRNA nucleotidyltransferase {ECO:0000313|EMBL:ETK00590.1}; TaxID=1411148 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella sp. oral tax
polyA polymerase family protein
13_1_40cm_4_scaffold_226_10
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12228..13100)
DNA (873bp) protein (291aa)
Transcriptional regulator/sugar kinase n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5CYL2_PELTS
NagC; transcriptional regulator/sugar kinase
Transcriptional regulator/sugar kinase {ECO:0000313|EMBL:BAF60915.1}; TaxID=370438 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum.;" source="Pelotomaculum ther
13_1_40cm_4_scaffold_226_11
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13131..14003)
DNA (873bp) protein (291aa)
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cy
Methylenetetrahydrofolate reductase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JEQ3_ANAD2
13_1_40cm_4_scaffold_226_12
RBG_13_Chloroflexi_53_26_curated, Chloroflexi, Bacteria

Not on your lists

comp(14126..15955)
DNA (1830bp) protein (610aa)
sti:Sthe_1974 selenocysteine-specific translation elongation factor; K03833 selenocysteine-specific elongation factor id=1242927 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
selenocysteine-specific translation elongation factor; K03833 selenocysteine-specific elongation factor Tax=RBG_13_Chloroflexi_53_26_curated
selB; selenocysteine-specific translation elongation factor
13_1_40cm_4_scaffold_226_13
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15952..17319)
DNA (1368bp) protein (456aa)
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine sy
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKP9_THEM7
13_1_40cm_4_scaffold_226_14
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17265..17933)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IXH6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB51144.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
membrane-associated peptidase
13_1_40cm_4_scaffold_226_15
unknown

Not on your lists

comp(18019..18285)
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_4_scaffold_226_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(18285..19466)
DNA (1182bp) protein (394aa)
hypothetical protein; K01551 arsenite-transporting ATPase [EC:3.6.3.16] Tax=GWA2_Rokubacteria_70_23_curated
arsenite-activated ATPase ArsA (EC:3.6.3.16)
Uncharacterized protein id=4137728 bin=GWF2_Methylomirabilis_70_14 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_226_17
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(19490..20014)
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T384_PALPW
hypothetical protein
Tax=BJP_IG2102_Coriobacteriales_64_17
13_1_40cm_4_scaffold_226_18
unknown

Not on your lists

comp(20053..20409)
DNA (357bp) protein (119aa)

This feature has no annotations

13_1_40cm_4_scaffold_226_19
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(20730..21068)
DNA (339bp) protein (113aa)
Glycine cleavage system H protein n=2 Tax=Desulfotomaculum RepID=F6B386_DESCC
glycine cleavage system H protein; K02437 glycine cleavage system H protein Tax=RBG_16_Chloroflexi_68_14_curated
glycine cleavage system H protein
13_1_40cm_4_scaffold_226_20
Bacillus sonorensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21290..22303)
DNA (1014bp) protein (338aa)
GTP-binding protein YchF n=1 Tax=Brevibacillus sp. phR RepID=UPI00031B95EA
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1274524 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sonorensis L12.;"
engD; GTP-dependent nucleic acid-binding protein EngD
13_1_40cm_4_scaffold_226_21
Dehalogenimonas sp. WBC-2, Dehalogenimonas, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(22304..23515)
DNA (1212bp) protein (404aa)
Aspartokinase {ECO:0000313|EMBL:AKG52838.1}; EC=2.7.2.4 {ECO:0000313|EMBL:AKG52838.1};; TaxID=943347 species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalogenimonas.;" source="Dehalogenimonas sp. WBC
aspK; aspartate kinase, monofunctional class; K00928 aspartate kinase [EC:2.7.2.4] id=14629418 bin=bin8_Chloro species=unknown genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
aspartate kinase (EC:2.7.2.4)
13_1_40cm_4_scaffold_226_22

Not on your lists

comp(23512..24324)
DNA (813bp) protein (271aa)
Homoserine kinase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3S6_SPHTD
homoserine kinase
Homoserine kinase {ECO:0000313|EMBL:BAL55822.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
13_1_40cm_4_scaffold_226_23
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24359..25402)
DNA (1044bp) protein (348aa)
threonine synthase (EC:4.2.3.1)
Threonine synthase {ECO:0000256|PIRNR:PIRNR038945}; EC=4.2.3.1 {ECO:0000256|PIRNR:PIRNR038945};; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae
Threonine synthase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RIX0_MOOTA
13_1_40cm_4_scaffold_226_24
RBG_16_Chloroflexi_58_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(25406..26698)
DNA (1293bp) protein (431aa)
deb:DehaBAV1_1016 homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] id=1241401 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] Tax=RBG_16_Chloroflexi_58_8_curated
homoserine dehydrogenase
13_1_40cm_4_scaffold_226_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

26719..27675
DNA (957bp) protein (319aa)
ornithine cyclodeaminase; K01750 ornithine cyclodeaminase [EC:4.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ornithine cyclodeaminase; K01750 ornithine cyclodeaminase [EC:4.3.1.12] id=14627425 bin=bin7_NC10_sister species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
ocd; ornithine cyclodeaminase (EC:4.3.1.12)
13_1_40cm_4_scaffold_226_26
unknown

Not on your lists

comp(27672..27962)
DNA (291bp) protein (97aa)

This feature has no annotations

13_1_40cm_4_scaffold_226_27
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(27937..28488)
DNA (552bp) protein (184aa)
RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) RepID=C0ZB38_BREBN
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_RIF_CHLX_72_14_curated
RNA polymerase ECF-type sigma factor
Displaying 27 items

View Taxonomy