ggKbase home page

13_1_40cm_4_scaffold_254

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_254_1
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

1..213
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000374615D
hypothetical protein Tax=RBG_16_RIF_CHLX_72_14_curated
GMC oxidoreductase
13_1_40cm_4_scaffold_254_2
Thermus sp. NMX2.A1, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(400..1842)
DNA (1443bp) protein (481aa)
methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27)
methylmalonate-semialdehyde dehydrogenase n=1 Tax=Thermus islandicus RepID=UPI0003B46208
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:ETN89273.1}; TaxID=570924 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus sp. NMX2.A1.
13_1_40cm_4_scaffold_254_3
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

1864..2652
DNA (789bp) protein (263aa)
short-chain dehydrogenase id=14628791 bin=bin8_Chloro species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
short-chain dehydrogenase Tax=CSP1_4_Chloroflexi
short-chain dehydrogenase
13_1_40cm_4_scaffold_254_4
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

2673..3542
DNA (870bp) protein (290aa)
Beta-lactamase domain protein id=4775476 bin=GWC2_Chloroflexi_73_18 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
beta-lactamase domain-containing protein Tax=GWC2_RIF_CHLX_73_18_curated
beta-lactamase domain-containing protein
13_1_40cm_4_scaffold_254_5
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(3539..4468)
DNA (930bp) protein (310aa)
pyruvate phosphate dikinase (EC:2.7.9.1); K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] Tax=GWC2_RIF_CHLX_73_18_curated
Pyruvate, phosphate dikinase id=4775510 bin=GWC2_Chloroflexi_73_18 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
pyruvate, phosphate dikinase
13_1_40cm_4_scaffold_254_6
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

4797..5753
DNA (957bp) protein (319aa)
hypothetical protein Tax=RBG_16_RIF_CHLX_70_13_curated
13_1_40cm_4_scaffold_254_7
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(5603..7786)
DNA (2184bp) protein (728aa)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) Tax=GWC2_RIF_CHLX_73_18_curated
Xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein id=4775506 bin=GWC2_Chloroflexi_73_18 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
13_1_40cm_4_scaffold_254_8
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(7783..8253)
DNA (471bp) protein (157aa)
xanthine dehydrogenase (EC:1.17.1.4) Tax=GWC2_RIF_CHLX_73_18_curated
Putative xanthine dehydrogenase id=4775507 bin=GWC2_Chloroflexi_73_18 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
(2Fe-2S)-binding domain-containing protein
13_1_40cm_4_scaffold_254_9
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(8260..9117)
DNA (858bp) protein (286aa)
Xanthine dehydrogenase FAD-binding subunit (EC:1.17.1.4) Tax=GWC2_RIF_CHLX_73_18_curated
Xanthine dehydrogenase FAD-binding subunit (EC:1.17.1.4)
Xanthine dehydrogenase FAD-binding subunit id=4775508 bin=GWC2_Chloroflexi_73_18 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
13_1_40cm_4_scaffold_254_10
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(9142..11007)
DNA (1866bp) protein (622aa)
PEP-utilizing enzyme, mobile region id=4775512 bin=GWC2_Chloroflexi_73_18 species=Nocardioides sp. genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
PEP-utilizing protein Tax=GWC2_RIF_CHLX_73_18_curated
PEP-utilizing protein
13_1_40cm_4_scaffold_254_11
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11054..12106
DNA (1053bp) protein (351aa)
talB; transaldolase (EC:2.2.1.2)
Transaldolase {ECO:0000256|SAAS:SAAS00118670, ECO:0000313|EMBL:CCH87794.1}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670, ECO:0000313|EMBL:CCH87794.1};; TaxID=1144889 species="Bacteria; Actinobacteria; G
Transaldolase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EWN1_MODMB
13_1_40cm_4_scaffold_254_12
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

12120..13037
DNA (918bp) protein (306aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5US90_ROSS1
xylose isomerase domain-containing protein
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ABQ89493.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" sour
13_1_40cm_4_scaffold_254_13

Not on your lists

13153..14205
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6X2_CALAS
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48674.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_1_40cm_4_scaffold_254_14

Not on your lists

14283..15788
DNA (1506bp) protein (502aa)
ABC transporter related protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EJQ5_9RHIZ
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48675.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ribose ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_254_15

Not on your lists

15785..16810
DNA (1026bp) protein (342aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48676.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ribose ABC transporter permease; K02057 simple sugar transport system permease protein id=14628807 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin8_Chloro organism_group=Chloroflexi
inner-membrane translocator
13_1_40cm_4_scaffold_254_16

Not on your lists

16807..17796
DNA (990bp) protein (330aa)
Putative ABC transporter permease protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6W9_CALAS
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48677.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ABC transporter permease
13_1_40cm_4_scaffold_254_17
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(17798..19279)
DNA (1482bp) protein (494aa)
amidase (EC:3.5.1.4)
Amidase {ECO:0000313|EMBL:ACZ38657.1}; EC=3.5.1.4 {ECO:0000313|EMBL:ACZ38657.1};; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacterac
Amidase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C340_SPHTD
13_1_40cm_4_scaffold_254_18
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

19337..20470
DNA (1134bp) protein (378aa)
Oxidoreductase domain protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NMT8_ROSCS
oxidoreductase domain-containing protein Tax=RBG_16_RIF_CHLX_72_14_curated
oxidoreductase domain-containing protein
13_1_40cm_4_scaffold_254_19
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

20482..21210
DNA (729bp) protein (243aa)
deoxyribose-phosphate aldolase (EC:4.1.2.4); K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4] Tax=RBG_16_RIF_CHLX_72_14_curated
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NMT7_ROSCS
13_1_40cm_4_scaffold_254_20
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

21497..21874
DNA (378bp) protein (126aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UX94_ROSS1
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABQ91247.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexu
13_1_40cm_4_scaffold_254_21
Amycolatopsis orientalis, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21879..22925
DNA (1047bp) protein (349aa)
Putative carboxylic acid dehydrogenase n=1 Tax=Amycolatopsis orientalis RepID=Q9XBD3_AMYOR
Putative carboxylic acid dehydrogenase {ECO:0000313|EMBL:CAB45039.1}; TaxID=31958 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis orien
hypothetical protein
13_1_40cm_4_scaffold_254_22
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22922..23548
DNA (627bp) protein (209aa)
glyoxylate reductase (EC:1.1.1.26)
Glyoxylate reductase {ECO:0000313|EMBL:ADU50352.1}; EC=1.1.1.26 {ECO:0000313|EMBL:ADU50352.1};; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incert
Glyoxylate reductase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SM22_THEM7
13_1_40cm_4_scaffold_254_23
Isoptericola variabilis, Isoptericola, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25617..25736)
DNA (120bp) protein (40aa)
hypothetical protein n=1 Tax=Actinoalloteichus spitiensis RepID=UPI00037326FD
ABC transporter
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEG45485.1}; Flags: Precursor;; TaxID=743718 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Isoptericola.;"
Displaying 23 items

View Taxonomy