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13_1_40cm_4_scaffold_406

Search features with annotation key words

Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_406_1
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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267..1355
DNA (1089bp) protein (363aa)
isocitrate dehydrogenase (NADP) (EC:1.1.1.42)
Isocitrate dehydrogenase (NADP) {ECO:0000313|EMBL:ABG05017.1}; EC=1.1.1.42 {ECO:0000313|EMBL:ABG05017.1};; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacter
Isocitrate dehydrogenase (NADP) n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AUB1_RUBXD
13_1_40cm_4_scaffold_406_2
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1345..1971
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9F9E9_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN94746.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium ce
13_1_40cm_4_scaffold_406_3

Not on your lists

comp(1961..2722)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=actinobacterium SCGC AAA024-D14 RepID=UPI0003754193
Uncharacterized protein {ECO:0000313|EMBL:KGA18552.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
LmbE family protein
13_1_40cm_4_scaffold_406_4
unknown

Not on your lists

comp(2742..4541)
DNA (1800bp) protein (600aa)

This feature has no annotations

13_1_40cm_4_scaffold_406_5
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4607..5944)
DNA (1338bp) protein (446aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" sou
Pyruvate kinase n=1 Tax=Thermincola potens (strain JR) RepID=D5XA33_THEPJ
pyruvate kinase
13_1_40cm_4_scaffold_406_6
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6010..6447)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Alicyclobacillus pohliae RepID=UPI000368C3AC
small GTP-binding protein
Tax=BJP_08E140C01_Clostridiales_46_19
13_1_40cm_4_scaffold_406_7
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6449..7723)
DNA (1275bp) protein (425aa)
Putative zinc metalloprotease ywhC (EC:3.4.24.-)
membrane protein n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI00036021A0
Membrane protein {ECO:0000313|EMBL:KHD76606.1}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
13_1_40cm_4_scaffold_406_8
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7734..8495)
DNA (762bp) protein (254aa)
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I0T3_DESAP
RNA methyltransferase
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:ACA58754.1}; TaxID=477974 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Des
13_1_40cm_4_scaffold_406_9
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

comp(8492..9910)
DNA (1419bp) protein (473aa)
cysS; Cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
Cysteine--tRNA ligase id=2856335 bin=GWF1_Spirochaetes_51_8 species=unknown genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
Cysteinyl-tRNA synthetase
13_1_40cm_4_scaffold_406_10
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

Not on your lists

comp(9907..10380)
DNA (474bp) protein (158aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] Tax=RBG_16_Chloroflexi_60_22_curated
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=ISPF_SYNWW
13_1_40cm_4_scaffold_406_11
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(10377..11072)
DNA (696bp) protein (232aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] id=14630656 bin=bin9_gal15 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
13_1_40cm_4_scaffold_406_12
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11075..12154)
DNA (1080bp) protein (360aa)
PilT protein domain protein n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GHA1_9FIRM
twitching motility protein PilT
Twitching motility protein PilT {ECO:0000313|EMBL:AHF05871.1}; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium m
13_1_40cm_4_scaffold_406_13
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(12166..13599)
DNA (1434bp) protein (478aa)
DNA repair protein RadA (EC:2.1.1.63)
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms id=24419342 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Osci
13_1_40cm_4_scaffold_406_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

13757..14746
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI000377048B
Pyridoxal-5'-phosphate-dependent protein beta subunit
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:AHG91680.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_406_15
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(14740..15567)
DNA (828bp) protein (276aa)
RDD domain containing protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UTN5_ROSS1
RDD domain-containing protein Tax=RBG_16_Chloroflexi_63_12_curated
RDD domain-containing protein
13_1_40cm_4_scaffold_406_16
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

15587..16564
DNA (978bp) protein (326aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NI82_ROSCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABU57182.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus cas
13_1_40cm_4_scaffold_406_17
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(16542..17870)
DNA (1329bp) protein (443aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UUC2_ROSS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ90225.1}; Flags: Precursor;; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" sour
13_1_40cm_4_scaffold_406_18
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(17887..18852)
DNA (966bp) protein (322aa)
ATPase n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IDD3_9CHLR
ATPase {ECO:0000313|EMBL:EFO80810.1}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoid
ATPase
13_1_40cm_4_scaffold_406_19
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(18849..19994)
DNA (1146bp) protein (382aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NM36_ROSCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABU58591.1}; Flags: Precursor;; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" sour
13_1_40cm_4_scaffold_406_20
unknown

Not on your lists

comp(19991..20743)
DNA (753bp) protein (251aa)

This feature has no annotations

13_1_40cm_4_scaffold_406_21
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20916..21746)
DNA (831bp) protein (277aa)
Integral membrane protein n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6WEP0_KINRD
Uncharacterized protein {ECO:0000313|EMBL:KJK33064.1}; TaxID=68170 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Noc
integral membrane protein
13_1_40cm_4_scaffold_406_22
RBG_19FT_COMBO_OP11_43_10_curated, Microgenomates, Bacteria

Not on your lists

21812..22210
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI00037F4E13
response regulator receiver protein Tax=RBG_19FT_COMBO_OP11_43_10_curated
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
13_1_40cm_4_scaffold_406_23
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(22330..24831)
DNA (2502bp) protein (834aa)
ClpC ATPase; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC id=14630136 bin=bin8_Chloro species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
ClpC ATPase; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=CSP1_4_Chloroflexi
ClpA; ATPase with chaperone activity, ATP-binding subunit
13_1_40cm_4_scaffold_406_24
unknown

Not on your lists

24968..26554
DNA (1587bp) protein (529aa)

This feature has no annotations

13_1_40cm_4_scaffold_406_25
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists


comp(26656..27852)
DNA (1197bp) protein (399aa)
30S ribosomal protein S1 id=4288588 bin=GWC2_Methylomirabilis_70_24 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
RNA binding S1 domain-containing protein; K02945 small subunit ribosomal protein S1 Tax=RBG_16_RIF_CHLX_72_14_curated
RNA binding S1 domain-containing protein
13_1_40cm_4_scaffold_406_26
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(27944..28762)
DNA (819bp) protein (273aa)
pantoate/beta-alanine ligase (EC:6.3.2.1)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAA
Pantothenate synthetase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1L9_SPHTD
Displaying 26 items

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