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13_1_40cm_4_scaffold_1493

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1493_1
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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2..106
DNA (105bp) protein (35aa)
xseB; exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
13_1_40cm_4_scaffold_1493_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

1105..1851
DNA (747bp) protein (249aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
putative hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] id=12557832 bin=CNBR_ACIDO species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hemolysin A
13_1_40cm_4_scaffold_1493_3
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

1838..2782
DNA (945bp) protein (315aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169] Tax=RBG_13_Bathyarchaeota_46_16b_curated
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169] id=5240910 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
13_1_40cm_4_scaffold_1493_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2872..3747
DNA (876bp) protein (292aa)
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Probable inorganic polyphosphate/ATP-NAD kinase id=2598283 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ATP-NAD/AcoX kinase
13_1_40cm_4_scaffold_1493_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(3910..5421)
DNA (1512bp) protein (504aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI000369ED1A
peptidase M20 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
peptidase M20
13_1_40cm_4_scaffold_1493_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(5736..6770)
DNA (1035bp) protein (345aa)
aminodeoxychorismate lyase; K07082 UPF0755 protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
aminodeoxychorismate lyase; K07082 UPF0755 protein id=12557834 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
aminodeoxychorismate lyase
13_1_40cm_4_scaffold_1493_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6786..7211)
DNA (426bp) protein (142aa)
Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] id=12557835 bin=CNBR_ACIDO species=Desulfovibrio desulfuricans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Holliday junction resolvase YqgF
13_1_40cm_4_scaffold_1493_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

7249..9306
DNA (2058bp) protein (686aa)
Type I phosphodiesterase / nucleotide pyrophosphatase superfamily n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1B1_9GAMM
type I phosphodiesterase/nucleotide pyrophosphatase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
type I phosphodiesterase/nucleotide pyrophosphatase
13_1_40cm_4_scaffold_1493_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

9287..10465
DNA (1179bp) protein (393aa)
peptidase M23B Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein id=24440192 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_4_scaffold_1493_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

10479..11645
DNA (1167bp) protein (389aa)
carboxyl-terminal protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
carboxyl-terminal protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] id=12557836 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
carboxyl-terminal protease (EC:3.4.21.102)
13_1_40cm_4_scaffold_1493_trna_1
unknown

Not on your lists

11691..11763
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_1493_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

11786..13732
DNA (1947bp) protein (649aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] id=12557837 bin=CNBR_ACIDO species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
thrS; threonyl-tRNA synthetase
13_1_40cm_4_scaffold_1493_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

13777..14331
DNA (555bp) protein (185aa)
translation initiation factor 3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
translation initiation factor 3; K02520 translation initiation factor IF-3 id=12557838 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
translation initiation factor 3
13_1_40cm_4_scaffold_1493_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


14402..14608
DNA (207bp) protein (69aa)
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 id=12557839 bin=CNBR_ACIDO species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpmI; 50S ribosomal protein L35
13_1_40cm_4_scaffold_1493_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists


14621..14989
DNA (369bp) protein (123aa)
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 id=12557840 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplT; 50S ribosomal protein L20
13_1_40cm_4_scaffold_1493_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


15041..16114
DNA (1074bp) protein (358aa)
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
phenylalanyl-tRNA synthetase subunit alpha id=12557841 bin=CNBR_ACIDO species=Thioalkalivibrio thiocyanoxidans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_4_scaffold_1493_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


16191..18269
DNA (2079bp) protein (693aa)
phenylalanyl-tRNA synthetase subunit beta, non-spirochete bacterial (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phenylalanyl-tRNA synthetase subunit beta, non-spirochete bacterial (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=12557842 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
13_1_40cm_4_scaffold_1493_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

18276..18554
DNA (279bp) protein (93aa)
id=12557843 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
id=12557843 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_4_scaffold_1493_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

18638..18931
DNA (294bp) protein (98aa)
hypothetical protein; K09888 cell division protein ZapA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
putative cell division protein ZapA; K09888 cell division protein ZapA id=12557844 bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_4_scaffold_1493_19
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

19038..19292
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037EDD11
hypothetical protein Tax=RBG_13_Planctomycetes_62_9_curated
efflux ABC transporter inner membrane protein
13_1_40cm_4_scaffold_1493_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

19745..21319
DNA (1575bp) protein (525aa)
metal dependent phosphohydrolase (EC:3.1.4.16)
Ribonuclease Y n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F2J5_9FIRM
hypothetical protein; K06950 uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_4_scaffold_1493_21
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

21316..22464
DNA (1149bp) protein (383aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
thiamine-monophosphate kinase; K00946 thiamine-monophosphate kinase [EC:2.7.4.16] id=12557845 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
thiamine-monophosphate kinase (EC:2.7.4.16)
13_1_40cm_4_scaffold_1493_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

22461..22967
DNA (507bp) protein (169aa)
hypothetical protein; K09928 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Putative uncharacterized protein id=3918068 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
13_1_40cm_4_scaffold_1493_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

23016..23552
DNA (537bp) protein (179aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
3D domain-containing protein id=12557846 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
3D domain-containing protein
13_1_40cm_4_scaffold_1493_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(23694..25580)
DNA (1887bp) protein (629aa)
ABC transporter, ATPase subunit; K06147 ATP-binding cassette, subfamily B, bacterial Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial id=24433595 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
ABC transporter ATPase
13_1_40cm_4_scaffold_1493_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(25693..27471)
DNA (1779bp) protein (593aa)
xenobiotic-transporting ATPase (EC:3.6.3.44)
Xenobiotic-transporting ATPase n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) RepID=E8U5Z6_DEIML
multidrug ABC transporter ATPase/permease; K06147 ATP-binding cassette, subfamily B, bacterial Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_4_scaffold_1493_26
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

27663..29489
DNA (1827bp) protein (609aa)
carbon starvation protein CstA; K06200 carbon starvation protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Carbon starvation protein id=4998125 bin=GWA2_Ignavibacteria_55_11 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
carbon starvation protein CstA
13_1_40cm_4_scaffold_1493_27
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

30301..31128
DNA (828bp) protein (276aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01X83_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
Displaying 28 items

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