ggKbase home page

13_1_40cm_4_scaffold_2439

Search features with annotation key words

Displaying 24 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2439_1
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..597)
DNA (597bp) protein (199aa)
Integrin alpha beta-propellor repeat protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LMU6_HALO1
Integrin alpha beta-propellor repeat-containing protein Tax=GWA2_Burkholderiales_64_37_curated
alpha beta-propellor repeat-containing integrin
13_1_40cm_4_scaffold_2439_2
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(743..1192)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WF46_9SPHN
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
13_1_40cm_4_scaffold_2439_3
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(1196..1804)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Enterovibrio norvegicus RepID=UPI0003126B33
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
protein of unassigned function
13_1_40cm_4_scaffold_2439_4
unknown

Not on your lists

2231..2377
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_40cm_4_scaffold_2439_5
unknown

Not on your lists

3657..3797
DNA (141bp) protein (47aa)

This feature has no annotations

13_1_40cm_4_scaffold_2439_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3828..4892)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000315EB83
amidohydrolase 2 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
amidohydrolase 2
13_1_40cm_4_scaffold_2439_7
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(5322..6740)
DNA (1419bp) protein (473aa)
TonB-dependent receptor n=1 Tax=uncultured Acidobacteria bacterium A12 RepID=F8TTM0_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein
13_1_40cm_4_scaffold_2439_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8490..9023
DNA (534bp) protein (178aa)
Transcriptional regulator n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGN9_9BACT
Transcriptional regulator {ECO:0000313|EMBL:EEF61090.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pe
ArsR family transcriptional regulator
13_1_40cm_4_scaffold_2439_9
unknown

Not on your lists

9045..9173
DNA (129bp) protein (43aa)

This feature has no annotations

13_1_40cm_4_scaffold_2439_10
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9196..10371
DNA (1176bp) protein (392aa)
transferase n=1 Tax=Actinopolymorpha alba RepID=UPI00036C67C5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG04814.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strai
13_1_40cm_4_scaffold_2439_11
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

10413..11612
DNA (1200bp) protein (400aa)
GAF sensor signal transduction histidine kinase (EC:2.7.3.-)
GAF sensor signal transduction histidine kinase {ECO:0000313|EMBL:ABG05529.1}; EC=2.7.3.- {ECO:0000313|EMBL:ABG05529.1};; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales
GAF sensor signal transduction histidine kinase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASU9_RUBXD
13_1_40cm_4_scaffold_2439_12
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

11609..12235
DNA (627bp) protein (209aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASU8_RUBXD
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABG05530.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae;
13_1_40cm_4_scaffold_2439_13
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12437..13156
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037EEFDF
Short-chain dehydrogenase {ECO:0000313|EMBL:ESW78989.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium s
short-chain dehydrogenase protein
13_1_40cm_4_scaffold_2439_14
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13596..14264
DNA (669bp) protein (223aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|SAAS:SAAS00094434};; Flags: Fragment;; TaxID=1398085 species="Bacteria; Proteobacteria
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036DCCD4
S-adenosylmethionine tRNA ribosyltransferase-isomerase protein
13_1_40cm_4_scaffold_2439_15
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14337..15410
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI000367F5C5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ08964.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (s
13_1_40cm_4_scaffold_2439_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

15425..17140
DNA (1716bp) protein (572aa)
Uncharacterized protein n=1 Tax=Luminiphilus syltensis NOR5-1B RepID=B8KSL4_9GAMM
SMP-30/gluconolaconase/LRE domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
SMP-30/gluconolaconase/LRE domain-containing protein
13_1_40cm_4_scaffold_2439_17
unknown

Not on your lists

comp(17137..17652)
DNA (516bp) protein (172aa)

This feature has no annotations

13_1_40cm_4_scaffold_2439_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17957..18385
DNA (429bp) protein (143aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14627394 bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_2439_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(18752..20554)
DNA (1803bp) protein (601aa)
polyvinyl-alcohol dehydrogenase (EC:1.1.2.6); K05889 polyvinyl alcohol dehydrogenase (cytochrome) [EC:1.1.2.6] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
cytochrome CBB3 n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037A9167
polyvinyl-alcohol dehydrogenase
13_1_40cm_4_scaffold_2439_20
RLO_Gammaproteobacteria_52_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20827..21207
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036BEC4D
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated
hypothetical protein
13_1_40cm_4_scaffold_2439_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(21340..21786)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R716_PELHB
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_40cm_4_scaffold_2439_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(21939..22457)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D95279
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_40cm_4_scaffold_2439_23
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(22454..23944)
DNA (1491bp) protein (497aa)
Feruloyl esterase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NXE6_GRAMM
feruloyl esterase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
feruloyl esterase
13_1_40cm_4_scaffold_2439_24
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(23898..24395)
DNA (498bp) protein (166aa)
PepSY-associated TM helix family protein 9 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HSU0_ACHXA
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PepSY-associated TM helix family protein 9
Displaying 24 items

View Taxonomy