ggKbase home page

13_1_40cm_4_scaffold_645

Search features with annotation key words

Displaying 26 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_645_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

411..1478
DNA (1068bp) protein (356aa)
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Type IV pilus assembly protein PilM id=1737765 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
type IV pilus assembly protein PilM
13_1_40cm_4_scaffold_645_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1475..2095
DNA (621bp) protein (207aa)
Tfp pilus assembly protein, PilN-like; K02663 type IV pilus assembly protein PilN Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Pili assembly protein id=12555300 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_4_scaffold_645_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

2178..2795
DNA (618bp) protein (206aa)
pilus assembly protein, PilO-like; K02664 type IV pilus assembly protein PilO Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
fimbrial assembly protein PilO; K02664 type IV pilus assembly protein PilO id=12555299 bin=CNBR_ACIDO species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_4_scaffold_645_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

2798..3412
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Streptococcus pneumoniae SP6-BS73 RepID=A5LJ23_STREE
id=12555298 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
TonB family protein
13_1_40cm_4_scaffold_645_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

3412..5448
DNA (2037bp) protein (679aa)
type II and III secretion system protein; K02666 type IV pilus assembly protein PilQ Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
type II and III secretion system protein; K02666 type IV pilus assembly protein PilQ id=16781335 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
type II and III secretion system protein
13_1_40cm_4_scaffold_645_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

5457..6083
DNA (627bp) protein (209aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=12555296 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_4_scaffold_645_7
unknown

Not on your lists

comp(6414..6635)
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_40cm_4_scaffold_645_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

6785..7402
DNA (618bp) protein (206aa)
PDK repeat-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PKD domain-containing protein id=24547293 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PKD domain-containing protein
13_1_40cm_4_scaffold_645_9
unknown

Not on your lists

comp(7441..7935)
DNA (495bp) protein (165aa)

This feature has no annotations

13_1_40cm_4_scaffold_645_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

8237..9430
DNA (1194bp) protein (398aa)
putative Xaa-Pro dipeptidase; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] id=12555293 bin=CNBR_ACIDO species=Exiguobacterium pavilionensis genus=Exiguobacterium taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Xaa-Pro aminopeptidase
13_1_40cm_4_scaffold_645_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9430..9936
DNA (507bp) protein (169aa)
acetyl-CoA carboxylase, biotin carboxyl carrier protein (EC:6.4.1.1)
biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
acetyl-CoA carboxylase biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein id=12555292 bin=CNBR_ACIDO species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_4_scaffold_645_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

10058..11431
DNA (1374bp) protein (458aa)
accC; acetyl-CoA carboxylase, biotin carboxylase (EC:6.4.1.2); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
accC; acetyl-CoA carboxylase, biotin carboxylase (EC:6.4.1.2); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] id=12555291 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
accC; acetyl-CoA carboxylase, biotin carboxylase (EC:6.4.1.2)
13_1_40cm_4_scaffold_645_13
unknown

Not on your lists

comp(11487..11600)
DNA (114bp) protein (38aa)

This feature has no annotations

13_1_40cm_4_scaffold_645_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11765..12274
DNA (510bp) protein (170aa)
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] id=12555290 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
thiE; thiamine-phosphate pyrophosphorylase (TMP pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) (EC:2.5.1.3)
13_1_40cm_4_scaffold_645_15
RifOxyA12_full_Elusimicrobia_57_11_curated, Elusimicrobia, Bacteria

Not on your lists

12349..13857
DNA (1509bp) protein (503aa)
amino acid/polyamine/organocation transporter, apc superfamily; K03294 basic amino acid/polyamine antiporter, APA family Tax=RifOxyA12_full_Elusimicrobia_57_11_curated
Putative uncharacterized protein id=4983172 bin=GWA2_Elusimicrobia_56_46 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
amino acid/polyamine/organocation transporter, APC superfamily
13_1_40cm_4_scaffold_645_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

13877..14893
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI0003724C6D
TrkA-N domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
TrkA-N domain-containing protein
13_1_40cm_4_scaffold_645_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

15064..15999
DNA (936bp) protein (312aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] Tax=RIFCSPLOWO2_02_FULL_Acid
5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9) id=12555289 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
methenyltetrahydrofolate cyclohydrolase
13_1_40cm_4_scaffold_645_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

16180..16728
DNA (549bp) protein (183aa)
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9) id=12555289 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
dephospho-CoA kinase (EC:2.7.1.24)
13_1_40cm_4_scaffold_645_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16740..17957)
DNA (1218bp) protein (406aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein id=12555288 bin=CNBR_ACIDO species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_4_scaffold_645_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(17954..18646)
DNA (693bp) protein (231aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curate
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45) id=12555287 bin=CNBR_ACIDO species=Sutterella wadsworthensis genus=Sutterella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
13_1_40cm_4_scaffold_645_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(18627..19622)
DNA (996bp) protein (332aa)
KpsF/GutQ; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13) id=12555286 bin=CNBR_ACIDO species=Alcanivorax pacificus genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
KpsF/GutQ family protein
13_1_40cm_4_scaffold_645_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(19615..20463)
DNA (849bp) protein (283aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
2-dehydro-3-deoxyphosphooctonate aldolase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] id=12555285 bin=CNBR_ACIDO species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
2-dehydro-3-deoxyphosphooctonate aldolase
13_1_40cm_4_scaffold_645_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20507..22159)
DNA (1653bp) protein (551aa)
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
pyrG; CTP synthetase; K01937 CTP synthase [EC:6.3.4.2] id=12555284 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pyrG; CTP synthetase
13_1_40cm_4_scaffold_645_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(22168..22824)
DNA (657bp) protein (219aa)
3-deoxy-manno-octulosonate cytidylyltransferase; K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
3-deoxy-D-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] id=12555283 bin=CNBR_ACIDO species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase
13_1_40cm_4_scaffold_645_25
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

23152..23670
DNA (519bp) protein (173aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_4_scaffold_645_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

23727..23876
DNA (150bp) protein (50aa)
diacylglycerol kinase catalytic protein; K07029 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Displaying 26 items

View Taxonomy