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13_1_40cm_4_scaffold_1166

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1166_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(441..1253)
DNA (813bp) protein (271aa)
Putative membrane protein n=1 Tax=uncultured bacterium A1Q1_fos_560 RepID=L7VSP8_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_4_scaffold_1166_2
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(1263..2030)
DNA (768bp) protein (256aa)
Putative Type IV pilus biogenesis/stability protein PilW n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIF2_9BACT
putative type IV pilus biogenesis/stability protein PilW
Putative Type IV pilus biogenesis/stability protein PilW {ECO:0000313|EMBL:CBK43039.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nit
13_1_40cm_4_scaffold_1166_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(2027..2941)
DNA (915bp) protein (305aa)
putative carbohydrate/purine kinase (EC:2.7.1.-) Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative carbohydrate/purine kinase (EC:2.7.1.-)
Ribokinase n=1 Tax=uncultured bacterium A1Q1_fos_560 RepID=L7VWZ3_9BACT
13_1_40cm_4_scaffold_1166_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3007..3903)
DNA (897bp) protein (299aa)
putative s-methyl-5'-thioadenosine phosphorylase (EC:2.4.2.28); K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative s-methyl-5'-thioadenosine phosphorylase (EC:2.4.2.28)
S-methyl-5'-thioadenosine phosphorylase n=1 Tax=uncultured bacterium A1Q1_fos_560 RepID=L7W0U1_9BACT
13_1_40cm_4_scaffold_1166_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3940..4989)
DNA (1050bp) protein (350aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIF5_9BACT
13_1_40cm_4_scaffold_1166_6

Not on your lists

comp(5072..6850)
DNA (1779bp) protein (593aa)
DNA mismatch repair protein MutL n=1 Tax=uncultured bacterium A1Q1_fos_560 RepID=L7VSQ3_9BACT
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1256584 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_560.;
mutL; DNA mismatch repair protein MutL
13_1_40cm_4_scaffold_1166_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(7228..8052)
DNA (825bp) protein (275aa)
Putative Tol-Pal system protein YbgF n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIF7_9BACT
putative tol-Pal system protein YbgF Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative tol-Pal system protein YbgF
13_1_40cm_4_scaffold_1166_8
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(8058..9356)
DNA (1299bp) protein (433aa)
Putative Tol-Pal system protein YbgF (Modular protein) n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIF8_9BACT
putative tol-Pal system protein YbgF
Putative Tol-Pal system protein YbgF (Modular protein) {ECO:0000313|EMBL:CBK43045.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitro
13_1_40cm_4_scaffold_1166_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(9396..10019)
DNA (624bp) protein (208aa)
Peptidoglycan-associated lipoprotein Pal (Modular protein) n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIF9_9BACT
pal; peptidoglycan-associated lipoprotein pal; K03640 peptidoglycan-associated lipoprotein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pal; peptidoglycan-associated lipoprotein pal
13_1_40cm_4_scaffold_1166_10

Not on your lists

comp(10102..11427)
DNA (1326bp) protein (442aa)
TolB protein, periplasmic protein involved in the tonb-independent uptake of group A colicins n=1 Tax=uncultured bacterium A1Q1_fos_560 RepID=L7VXH2_9BACT
TolB protein, periplasmic protein involved in the tonb-independent uptake of group A colicins {ECO:0000313|EMBL:AGC72141.1}; TaxID=1256584 species="Bacteria; environmental samples.;" source="unculture
tolB; protein TolB
13_1_40cm_4_scaffold_1166_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(11424..12452)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=uncultured bacterium A1Q1_fos_560 RepID=L7VSQ7_9BACT
TonB family protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative protein TolA
13_1_40cm_4_scaffold_1166_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(12480..12932)
DNA (453bp) protein (151aa)
Protein TolR n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIG2_9BACT
tolR; protein TolR; K03560 biopolymer transport protein TolR Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
tolR; protein TolR
13_1_40cm_4_scaffold_1166_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(12929..13651)
DNA (723bp) protein (241aa)
MotA/TolQ/ExbB proton channel family protein n=1 Tax=uncultured bacterium A1Q1_fos_560 RepID=L7VX00_9BACT
tolQ; protein TolQ; K03562 biopolymer transport protein TolQ Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
tolQ; protein TolQ
13_1_40cm_4_scaffold_1166_trna_2
unknown

Not on your lists

comp(13892..13967)
DNA (76bp)
transferRNA
13_1_40cm_4_scaffold_1166_trna_1
unknown

Not on your lists

comp(14059..14131)
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_1166_14
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(14230..15189)
DNA (960bp) protein (320aa)
Tyrosine recombinase XerD n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AN46_PELPD
tyrosine recombinase XerD; K04763 integrase/recombinase XerD Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
tyrosine recombinase XerD
13_1_40cm_4_scaffold_1166_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

15242..17305
DNA (2064bp) protein (688aa)
Branched chain amino acid ABC transporter substrate-binding protein n=1 Tax=uncultured bacterium A1Q1_fos_560 RepID=L7VXH4_9BACT
putative extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative extracellular ligand-binding receptor
13_1_40cm_4_scaffold_1166_16
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

17334..18326
DNA (993bp) protein (331aa)
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase n=1 Tax=uncultured bacterium A1Q1_fos_560 RepID=L7VSR2_9BACT
13_1_40cm_4_scaffold_1166_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

18986..19990
DNA (1005bp) protein (335aa)
gapA; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
gapA; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA7_9BACT
13_1_40cm_4_scaffold_1166_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

21024..21257
DNA (234bp) protein (78aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA6_9BACT
13_1_40cm_4_scaffold_1166_19
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

21305..22075
DNA (771bp) protein (257aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
tpiA; triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA5_9BACT
13_1_40cm_4_scaffold_1166_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

22106..22477
DNA (372bp) protein (124aa)
Preprotein translocase, membrane subunit SecG n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA4_9BACT
secG; preprotein translocase, membrane subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
secG; preprotein translocase, membrane subunit SecG
13_1_40cm_4_scaffold_1166_21
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(22528..23442)
DNA (915bp) protein (305aa)
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA3_9BACT
13_1_40cm_4_scaffold_1166_22
unknown

Not on your lists

comp(23608..23874)
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_4_scaffold_1166_23
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


24000..24314
DNA (315bp) protein (105aa)
50S ribosomal protein L21 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA2_9BACT
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rplU; 50S ribosomal protein L21
13_1_40cm_4_scaffold_1166_24
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


24336..24608
DNA (273bp) protein (91aa)
50S ribosomal protein L27 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA1_9BACT
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpmA; 50S ribosomal protein L27
13_1_40cm_4_scaffold_1166_25
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24684..25058
DNA (375bp) protein (125aa)
narL; two component system DNA-binding response regulator Tax=RBG_16_Betaproteobacteria_64_18_curated
Response regulator receiver protein id=3068380 bin=GWC2_Methylomirabilis_70_16 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
response regulator receiver domain-containing protein
Displaying 27 items

View Taxonomy