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13_1_40cm_4_scaffold_1649

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1649_1
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(262..753)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PGD8_9BACT
hypothetical protein Tax=RBG_16_Chloroflexi_52_11_curated
hypothetical protein
13_1_40cm_4_scaffold_1649_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(792..1619)
DNA (828bp) protein (276aa)
Manganese transport system, permease component n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAA2_9BACT
mntC; manganese transport system permease; K09816 zinc transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
mntC; manganese transport system permease
13_1_40cm_4_scaffold_1649_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1652..2434)
DNA (783bp) protein (261aa)
mntB; manganese transport system ATPase (EC:3.6.3.-); K09820 manganese/iron transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
mntB; manganese transport system ATPase (EC:3.6.3.-)
Manganese transport system, ATPase component n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAA3_9BACT
13_1_40cm_4_scaffold_1649_4
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(2441..3433)
DNA (993bp) protein (331aa)
Putative Manganese transport system, periplasmic binding component n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAA4_9BACT
putative manganese transport system, periplasmic-binding protein; K09818 manganese/iron transport system substrate-binding protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
putative manganese transport system, periplasmic-binding protein
13_1_40cm_4_scaffold_1649_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

3596..4768
DNA (1173bp) protein (391aa)
anmK; anhydro-N-acetylmuramic acid kinase (EC:2.7.1.-); K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
anmK; anhydro-N-acetylmuramic acid kinase (EC:2.7.1.-)
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAA5_9BACT
13_1_40cm_4_scaffold_1649_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

4797..5315
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAA6_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_4_scaffold_1649_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

5380..6261
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAA8_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_4_scaffold_1649_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

6340..7902
DNA (1563bp) protein (521aa)
Radical SAM domain-containing protein id=14626153 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Radical SAM domain-containing protein Tax=CSP1_6_Rokubacteria
Radical SAM domain-containing protein
13_1_40cm_4_scaffold_1649_9
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

7938..8651
DNA (714bp) protein (238aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
hypothetical protein id=14431475 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1649_10
unknown

Not on your lists

comp(8646..9455)
DNA (810bp) protein (270aa)

This feature has no annotations

13_1_40cm_4_scaffold_1649_11
unknown

Not on your lists

comp(9921..10355)
DNA (435bp) protein (145aa)

This feature has no annotations

13_1_40cm_4_scaffold_1649_12
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

comp(10462..10800)
DNA (339bp) protein (113aa)
Ypch00940, SAM-dependent methyltransferase protein n=1 Tax=Amycolatopsis orientalis HCCB10007 RepID=R4SWH8_AMYOR
ypch00940, SAM-dependent methyltransferase protein
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
13_1_40cm_4_scaffold_1649_13
unknown

Not on your lists

comp(11157..11642)
DNA (486bp) protein (162aa)

This feature has no annotations

13_1_40cm_4_scaffold_1649_14
unknown

Not on your lists

11686..11892
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_4_scaffold_1649_15
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11992..12960)
DNA (969bp) protein (323aa)
Aldo/keto reductase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01U06_SOLUE
Aldo/keto reductase {ECO:0000313|EMBL:KIL38970.1}; TaxID=1590651 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. VKM B-2647.;"
aldo/keto reductase
13_1_40cm_4_scaffold_1649_16
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(12960..14405)
DNA (1446bp) protein (482aa)
Sigma-54 dependent DNA-binding response regulator n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PFE5_9BACT
sigma-54 dependent DNA-binding response regulator
Sigma-54 dependent DNA-binding response regulator {ECO:0000313|EMBL:CBK41982.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira
13_1_40cm_4_scaffold_1649_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(14402..14992)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PFE4_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_4_scaffold_1649_18
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(14992..16239)
DNA (1248bp) protein (416aa)
putative sensor histidine kinase (EC:2.7.13.3); K07711 two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
putative sensor histidine kinase (EC:2.7.13.3)
Putative Sensor histidine kinase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PFE3_9BACT
13_1_40cm_4_scaffold_1649_19
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(17454..17984)
DNA (531bp) protein (177aa)
Putative Response Regulator n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCQ7_9BACT
putative response regulator
Putative Response Regulator {ECO:0000313|EMBL:CBK41016.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_4_scaffold_1649_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

18769..19713
DNA (945bp) protein (315aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB3_9BACT
13_1_40cm_4_scaffold_1649_21
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

19990..20637
DNA (648bp) protein (216aa)
rpe; d-ribulose-5-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
rpe; d-ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB5_9BACT
13_1_40cm_4_scaffold_1649_22
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


20644..22218
DNA (1575bp) protein (525aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB6_9BACT
13_1_40cm_4_scaffold_1649_23
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


22296..24011
DNA (1716bp) protein (572aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanyl-tRNA synthetase, beta subunit n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB7_9BACT
13_1_40cm_4_scaffold_1649_24
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


comp(24089..24394)
DNA (306bp) protein (102aa)
50S ribosomal protein L20 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB8_9BACT
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus
13_1_40cm_4_scaffold_1649_25
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists


comp(24535..24738)
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAB9_9BACT
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
rpmI; 50S ribosomal protein L35
13_1_40cm_4_scaffold_1649_26
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(24771..25187)
DNA (417bp) protein (139aa)
Translation initiation factor IF-3 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC0_9BACT
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
infC; translation initiation factor IF-3
13_1_40cm_4_scaffold_1649_27
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(25301..27184)
DNA (1884bp) protein (628aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC1_9BACT
13_1_40cm_4_scaffold_1649_trna_1
unknown

Not on your lists

comp(27669..27740)
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_1649_28
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(27878..28150)
DNA (273bp) protein (91aa)
Transcriptional dual regulator HU-alpha n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC2_9BACT
hupA; transcriptional dual regulator HU-alpha; K03530 DNA-binding protein HU-beta Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
hupA; transcriptional dual regulator HU-alpha
13_1_40cm_4_scaffold_1649_29
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(28298..28882)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAC3_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
Displaying items 1-30 of 32 in total

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