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13_1_40cm_4_scaffold_6193

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_6193_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

503..1408
DNA (906bp) protein (302aa)
Ribosome-binding ATPase YchF n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TA60_HELMI
ychF; GTP-binding protein YchF; K06942 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
ychF; GTP-binding protein YchF
13_1_40cm_4_scaffold_6193_2
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2008..2757
DNA (750bp) protein (250aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q124E5_POLSJ
short chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABE46097.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromon
13_1_40cm_4_scaffold_6193_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


2986..3417
DNA (432bp) protein (144aa)
30S ribosomal protein S6 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBE7_9BACT
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpsF; 30S ribosomal protein S6
13_1_40cm_4_scaffold_6193_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

3401..3790
DNA (390bp) protein (130aa)
Single-stranded DNA-binding protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBE8_9BACT
ssb; single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
ssb; single-stranded DNA-binding protein
13_1_40cm_4_scaffold_6193_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

4140..4697
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF0_9BACT
hypothetical protein; K07040 uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_4_scaffold_6193_6
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists


4724..4906
DNA (183bp) protein (61aa)
rpmF; ribosomal protein L32; K02911 large subunit ribosomal protein L32 Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
50S ribosomal protein L32 id=3567763 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
rpmF; 50S ribosomal protein L32
13_1_40cm_4_scaffold_6193_7
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

5013..6023
DNA (1011bp) protein (337aa)
plsX; fatty acid/phospholipid synthesis protein; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
Phosphate acyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF2_9BACT
plsX; fatty acid/phospholipid synthesis protein
13_1_40cm_4_scaffold_6193_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

6020..6994
DNA (975bp) protein (325aa)
fabH; 3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
fabH; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF3_9BACT
13_1_40cm_4_scaffold_6193_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

7995..8891
DNA (897bp) protein (299aa)
fabD; malonyl-CoA-(acyl-carrier-protein) transacylase (EC:2.3.1.39); K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
fabD; malonyl-CoA-(acyl-carrier-protein) transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF4_9BACT
13_1_40cm_4_scaffold_6193_10
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

9018..9761
DNA (744bp) protein (248aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100) rbh
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:CBK40564.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CBK40564.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitro
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF5_9BACT
13_1_40cm_4_scaffold_6193_11
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

9859..10113
DNA (255bp) protein (85aa)
Acyl carrier protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF6_9BACT
acpP; acyl carrier protein; K02078 acyl carrier protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
acpP; acyl carrier protein
13_1_40cm_4_scaffold_6193_12
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

10135..11385
DNA (1251bp) protein (417aa)
fabF2; 3-oxoacyl-ACP synthase (EC:2.3.1.179 2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447, ECO:0000313|EMBL:CBK40566.1};; TaxID=330214 species="Bacteria; Nitrospirae; Ni
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF7_9BACT
13_1_40cm_4_scaffold_6193_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

11395..12129
DNA (735bp) protein (245aa)
rnc; ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF8_9BACT
13_1_40cm_4_scaffold_6193_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

12236..12859
DNA (624bp) protein (208aa)
ppiA; peptidylprolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493, ECO:0000313|EMBL:CBK40568.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirale
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBF9_9BACT
13_1_40cm_4_scaffold_6193_15
unknown

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13581..14090
DNA (510bp) protein (170aa)

This feature has no annotations

Displaying 15 items

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