ggKbase home page

13_1_40cm_4_scaffold_12079

Search features with annotation key words

Displaying 13 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_12079_1

Not on your lists

comp(3..1004)
DNA (1002bp) protein (334aa)
Bacterial extracellular solute-binding proteins, family 5 Middle {ECO:0000313|EMBL:AIA17927.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2949; ABC transporter periplasmic protein
13_1_40cm_4_scaffold_12079_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1001..2086)
DNA (1086bp) protein (362aa)
Alkanal monooxygenase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D6A8_BRAJP
Alkane 1-monooxygenase {ECO:0000313|EMBL:ETR75474.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
alkane 1-monooxygenase
13_1_40cm_4_scaffold_12079_3
Pseudanabaena biceps, Pseudanabaena, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(2164..2643)
DNA (480bp) protein (160aa)
neuA; CMP-N-acetlyneuraminic acid synthetase (EC:2.7.7.43)
Cupin 2 conserved barrel domain protein n=1 Tax=Pseudanabaena biceps PCC 7429 RepID=L8N2T9_9CYAN
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ELS34011.1}; TaxID=927668 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena bic
13_1_40cm_4_scaffold_12079_4
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2731..4287
DNA (1557bp) protein (519aa)
TPR repeat n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TFX5_9BRAD
TPR repeat {ECO:0000313|EMBL:CCE05363.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
conserved protein of unknown function, TPR repeat domain
13_1_40cm_4_scaffold_12079_5
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4329..5213
DNA (885bp) protein (295aa)
Tetratricopeptide repeat protein n=1 Tax=Polaromonas sp. CF318 RepID=J2TQC3_9BURK
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
hypothetical protein
13_1_40cm_4_scaffold_12079_6
RBG_19FT_COMBO_Chloroflexi_49_13_curated, Chloroflexi, Bacteria

Not on your lists

comp(5463..6635)
DNA (1173bp) protein (391aa)
alanine racemase Tax=RBG_19FT_COMBO_Chloroflexi_49_13_curated
Alanine racemase id=1838679 bin=GWD2_Chloroflexi_49_16 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
alanine racemase
13_1_40cm_4_scaffold_12079_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6669..6848
DNA (180bp) protein (60aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_12079_8
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6872..7606
DNA (735bp) protein (245aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ66_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJC17887.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
13_1_40cm_4_scaffold_12079_9
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7632..10175)
DNA (2544bp) protein (848aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Ge
Phosphorylase n=2 Tax=Geobacter sulfurreducens RepID=D7AL46_GEOSK
glgP; glycogen phosphorylase
13_1_40cm_4_scaffold_12079_10
unknown

Not on your lists

10464..11393
DNA (930bp) protein (310aa)

This feature has no annotations

13_1_40cm_4_scaffold_12079_11
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11912..12229
DNA (318bp) protein (106aa)
phytanoyl-CoA dioxygenase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B396DA
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:EWY38710.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella s
13_1_40cm_4_scaffold_12079_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(12226..13044)
DNA (819bp) protein (273aa)
Sugar ABC transporter permease id=4172268 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
sugar ABC transporter permease Tax=GWC2_Rokubacteria_70_16_curated
sugar ABC transporter permease
13_1_40cm_4_scaffold_12079_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13041..13259)
DNA (219bp) protein (73aa)
Binding-protein-dependent transport system inner membrane component id=4138947 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
binding-protein-dependent transport systems inner membrane component
Displaying 13 items

View Taxonomy