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13_1_40cm_4_scaffold_1615

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1615_1
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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2..1000
DNA (999bp) protein (333aa)
Putative response regulator in two-component regulatory system, sigma 54-dependent n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGP5_9BACT
response regulator in two-component regulatory system, sigma 54-dependent
Putative response regulator in two-component regulatory system, sigma 54-dependent {ECO:0000313|EMBL:CBE68926.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;
13_1_40cm_4_scaffold_1615_2
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

1000..1662
DNA (663bp) protein (221aa)
Multi-sensor signal transduction histidine kinase id=4034844 bin=GWC2_Nitrospirae_57_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
sensory box histidine kinase Tax=GWC2_Nitrospirae_57_13_curated
sensory histidine kinase CreC
13_1_40cm_4_scaffold_1615_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1643..2479)
DNA (837bp) protein (279aa)
Peptidase M50 id=2319281 bin=GWA2_Methylomirabilis_73_35 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase M50 Tax=GWA2_Rokubacteria_73_35_curated
peptidase M50
13_1_40cm_4_scaffold_1615_4
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(2490..3362)
DNA (873bp) protein (291aa)
putative mannose-1-phosphate guanylyltransferase (EC:2.7.7.22) Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
Nucleotidyl transferase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPT1_OPITP
nucleotidyl transferase
13_1_40cm_4_scaffold_1615_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3519..4277
DNA (759bp) protein (253aa)
short-chain dehydrogenase/reductase sdr; K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2-deoxy-D-gluconate 3-dehydrogenase (EC:1.1.1.125)
2-deoxy-D-gluconate 3-dehydrogenase id=4472645 bin=GWA2_Methylomirabilis_73_35 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1615_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4278..5861
DNA (1584bp) protein (528aa)
serA-2; D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
D-3-phosphoglycerate dehydrogenase id=3870380 bin=GWF2_Methylomirabilis_70_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-phosphoglycerate dehydrogenase
13_1_40cm_4_scaffold_1615_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5919..6332
DNA (414bp) protein (138aa)
lipoprotein
putative lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative lipoprotein id=3089751 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacter postgatei genus=Desulfobacter taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1615_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6641..8131)
DNA (1491bp) protein (497aa)
glucose-6-phosphate 1-dehydrogenase; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49); K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] id=14625649 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
13_1_40cm_4_scaffold_1615_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8115..9008)
DNA (894bp) protein (298aa)
gnd; 6-phosphogluconate dehydrogenase (EC:1.1.1.44); K00033 6-phosphogluconate dehydrogenase [EC:1.1.1.44] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gnd; 6-phosphogluconate dehydrogenase (EC:1.1.1.44)
6-phosphogluconate dehydrogenase (Decarboxylating) id=3814766 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1615_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9060..9806)
DNA (747bp) protein (249aa)
pgl; 6-phosphogluconolactonase (EC:3.1.1.31) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
6-phosphogluconolactonase (6PGL) id=3814683 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
6-phosphogluconolactonase
13_1_40cm_4_scaffold_1615_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9824..10582)
DNA (759bp) protein (253aa)
carbohydrate kinase FGGY; K00851 gluconokinase [EC:2.7.1.12] Tax=GWA2_Rokubacteria_73_35_curated
Carbohydrate kinase FGGY id=3814682 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative sugar kinase
13_1_40cm_4_scaffold_1615_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11255..11473
DNA (219bp) protein (73aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3814680 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1615_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11496..11783
DNA (288bp) protein (96aa)
selenoprotein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
selenoprotein id=4365896 bin=GWC2_Methylomirabilis_70_24 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
selenoprotein
13_1_40cm_4_scaffold_1615_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11823..12026
DNA (204bp) protein (68aa)
Uncharacterized protein id=3814676 bin=GWA2_Methylomirabilis_73_35 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_1615_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12023..13060
DNA (1038bp) protein (346aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4282852 bin=GWC2_Methylomirabilis_70_16 species=Natrialba asiatica genus=Natrialba taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1615_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13132..13602)
DNA (471bp) protein (157aa)
membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Membrane protein, putative id=4365892 bin=GWC2_Methylomirabilis_70_24 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
protein of unknown function DUF6 transmembrane
13_1_40cm_4_scaffold_1615_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13705..14031)
DNA (327bp) protein (109aa)
membrane protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Protein of hypothetical function DUF6 transmembrane id=3261980 bin=GWA2_Methylomirabilis_73_35 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1615_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

14058..14462
DNA (405bp) protein (135aa)
Phenylacetic acid degradation-related protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215N0_RHOPB
phenylacetic acid degradation-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
phenylacetic acid degradation-like protein
13_1_40cm_4_scaffold_1615_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14590..15492
DNA (903bp) protein (301aa)
mmsB; 3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
3-hydroxyisobutyrate dehydrogenase id=3261976 bin=GWA2_Methylomirabilis_73_35 species=Rhipicephalus pulchellus genus=Rhipicephalus taxon_order=Ixodida taxon_class=Arachnida phylum=Arthropoda tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-hydroxyisobutyrate dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_1615_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15538..15855
DNA (318bp) protein (106aa)
GYD domain superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GYD domain superfamily id=4895583 bin=GWC2_Methylomirabilis_70_16 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GYD domain superfamily
13_1_40cm_4_scaffold_1615_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15852..16322
DNA (471bp) protein (157aa)
Fe-S-cluster-containing hydrogenase components 2 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
iron-sulfur cluster-binding protein; potential subunit of aldehyde oxidoreductase id=14626791 bin=bin7_NC10_sister species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
iron-sulfur cluster-binding protein; potential subunit of aldehyde oxidoreductase
13_1_40cm_4_scaffold_1615_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16481..17806
DNA (1326bp) protein (442aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
FAD-dependent pyridine nucleotide-disulfide oxidoreductase id=14626790 bin=bin7_NC10_sister species=Methylomicrobium alcaliphilum genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
13_1_40cm_4_scaffold_1615_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17803..19680
DNA (1878bp) protein (626aa)
aldehyde:ferredoxin oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aldehyde:ferredoxin oxidoreductase id=14626789 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Crenarchaeota tax=bin7_NC10_sister organism_group=NC10
aldehyde:ferredoxin oxidoreductase
13_1_40cm_4_scaffold_1615_24
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(19677..20624)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA00_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39598.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
Displaying 24 items

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