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13_1_40cm_4_scaffold_3925

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Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3925_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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2..163
DNA (162bp) protein (54aa)
formate dehydrogenase major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] id=14627927 bin=bin7_NC10_sister species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
formate dehydrogenase major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=CSP1_6_Rokubacteria
formate dehydrogenase, alpha subunit
13_1_40cm_4_scaffold_3925_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

166..954
DNA (789bp) protein (263aa)
4Fe-4S ferredoxin; K00124 formate dehydrogenase, beta subunit Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
4Fe-4S ferredoxin iron-sulfur binding domain protein id=4440924 bin=GWF2_Methylomirabilis_70_14 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
13_1_40cm_4_scaffold_3925_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

947..1771
DNA (825bp) protein (275aa)
Polysulfide reductase NrfD; K04015 protein NrfD id=14627925 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Polysulfide reductase NrfD; K04015 protein NrfD Tax=CSP1_6_Rokubacteria
Polysulfide reductase NrfD
13_1_40cm_4_scaffold_3925_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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2744..3556
DNA (813bp) protein (271aa)
cytochrome c biogenesis protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ResC/HemX-like cytochrome c biogenesis membrane protein id=3448980 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ResC/HemX-like cytochrome c biogenesis membrane protein
13_1_40cm_4_scaffold_3925_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3556..4827
DNA (1272bp) protein (424aa)
hemA; glutamyl-tRNA reductase; K02492 glutamyl-tRNA reductase [EC:1.2.1.70] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamyl-tRNA reductase id=3448982 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutamyl-tRNA reductase
13_1_40cm_4_scaffold_3925_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5167..5697
DNA (531bp) protein (177aa)
hemC; porphobilinogen deaminase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61] Tax=GWA2_Rokubacteria_73_35_curated
Porphobilinogen deaminase id=3448984 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
porphobilinogen deaminase
13_1_40cm_4_scaffold_3925_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5694..6530
DNA (837bp) protein (279aa)
uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] Tax=GWA2_Rokubacteria_73_35_curated
hemD; porphyrin biosynthesis protein HemD (EC:2.1.1.107 4.2.1.75)
Uroporphyrin-III C-methyltransferase id=3449156 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3925_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6530..7516
DNA (987bp) protein (329aa)
hemB; Delta-aminolevulinic acid dehydratase (porphobilinogen synthase) (EC:4.2.1.24) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hemB; Delta-aminolevulinic acid dehydratase (porphobilinogen synthase) (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase id=4800836 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_3925_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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7531..7968
DNA (438bp) protein (146aa)
BadM/Rrf2 family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, Rrf2 family id=3942774 bin=GWA2_Methylomirabilis_73_35 species=Pseudoflavonifractor capillosus genus=Pseudoflavonifractor taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
BadM/Rrf2 family transcriptional regulator
13_1_40cm_4_scaffold_3925_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7982..8902
DNA (921bp) protein (307aa)
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47)
Cysteine synthase id=3942773 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3925_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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8925..9206
DNA (282bp) protein (94aa)
hypothetical protein; K03636 molybdopterin synthase sulfur carrier subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative Molybdopterin biosynthesis protein moeB (Modular protein) id=3367016 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Molybdopterin biosynthesis protein moeB
13_1_40cm_4_scaffold_3925_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9203..9667
DNA (465bp) protein (155aa)
Mov34/MPN/PAD-1 family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Mov34/MPN/PAD-1 family protein id=3942771 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative sulfurylase
13_1_40cm_4_scaffold_3925_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

9667..10944
DNA (1278bp) protein (426aa)
glutamate-1-semialdehyde-2,1-aminomutase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=GWC2_Rokubacteria_70_16_curated
Glutamate-1-semialdehyde 2,1-aminomutase id=3910780 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutamate-1-semialdehyde-2,1-aminomutase
13_1_40cm_4_scaffold_3925_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11019..11609
DNA (591bp) protein (197aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3942769 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome C
13_1_40cm_4_scaffold_3925_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11829..14522
DNA (2694bp) protein (898aa)
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] id=14626217 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
molybdopterin oxidoreductase Fe4S4 region
13_1_40cm_4_scaffold_3925_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14462..14698
DNA (237bp) protein (79aa)
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] id=14626217 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
mopA; protein MopA (EC:1.2.7.-)
13_1_40cm_4_scaffold_3925_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14739..16085
DNA (1347bp) protein (449aa)
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] id=14626218 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_3925_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16069..16581
DNA (513bp) protein (171aa)
hypothetical membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3806666 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Protein of unknown function DUF3341
13_1_40cm_4_scaffold_3925_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16578..17084
DNA (507bp) protein (169aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alcohol dehydrogenase large subunit id=3806665 bin=GWA2_Methylomirabilis_73_35 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_3925_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17086..18198
DNA (1113bp) protein (371aa)
MopC id=3806664 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mopC; protein MopC Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_3925_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18296..19495
DNA (1200bp) protein (400aa)
molybdenum cofactor synthesis protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] Tax=GWA2_Rokubacteria_73_35_curated
Molybdenum cofactor synthesis domain protein id=3806663 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdenum cofactor synthesis protein
13_1_40cm_4_scaffold_3925_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19537..20298
DNA (762bp) protein (254aa)
TPR repeat-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Tol-pal system protein YbgF id=3806662 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tol-pal system protein YbgF
13_1_40cm_4_scaffold_3925_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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20357..21265
DNA (909bp) protein (303aa)
transcriptional regulator, MarR family; K04096 DNA processing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA processing chain A (DprA/Smf) id=3806661 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA polymerase
13_1_40cm_4_scaffold_3925_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21252..23504
DNA (2253bp) protein (751aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase id=3919910 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3925_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

23501..24409
DNA (909bp) protein (303aa)
PfpI family intracellular peptidase; K03733 integrase/recombinase XerC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
site-specific recombinase, XerC; K03733 integrase/recombinase XerC id=14626231 bin=bin7_NC10_sister species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
recombinase XerC
13_1_40cm_4_scaffold_3925_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24406..24975
DNA (570bp) protein (190aa)
ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent protease subunit HslV id=4765391 bin=GWC2_Methylomirabilis_70_24 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ATP-dependent protease peptidase subunit
13_1_40cm_4_scaffold_3925_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24972..25607
DNA (636bp) protein (212aa)
ATP-dependent protease ATPase subunit HslU id=3919900 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hslU; ATPase component of the HslUV protease, also functions as molecular chaperone; heat shock protein Tax=GWA2_Rokubacteria_73_35_curated
hslU; ATPase component of the HslUV protease, also functions as molecular chaperone; heat shock protein
Displaying 27 items

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