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13_1_40cm_4_scaffold_13412

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_13412_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(1..99)
DNA (99bp) protein (33aa)
translation elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu Tax=GWA2_Rokubacteria_73_35_curated
tuf; elongation factor Tu id=14625952 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
tuf; elongation factor Tu
13_1_40cm_4_scaffold_13412_trna_4
unknown

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comp(147..219)
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_13412_trna_3
unknown

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comp(253..324)
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_13412_trna_2
unknown

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comp(361..443)
DNA (83bp)
transferRNA
13_1_40cm_4_scaffold_13412_trna_1
unknown

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comp(484..555)
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_13412_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(595..1347)
DNA (753bp) protein (251aa)
rRNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rRNA methyltransferase id=4675081 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rRNA methylase, putative, group 3
13_1_40cm_4_scaffold_13412_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1344..2738)
DNA (1395bp) protein (465aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cysteine--tRNA ligase id=4675082 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cysS; cysteinyl-tRNA ligase
13_1_40cm_4_scaffold_13412_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(2735..3214)
DNA (480bp) protein (160aa)
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] Tax=GWA2_Rokubacteria_73_35_curated
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase id=4675083 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
13_1_40cm_4_scaffold_13412_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(3211..3891)
DNA (681bp) protein (227aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60); K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase id=4675084 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum ruminis genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
13_1_40cm_4_scaffold_13412_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(3884..4903)
DNA (1020bp) protein (340aa)
hypothetical protein id=14625946 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
PilT protein domain-containing protein
13_1_40cm_4_scaffold_13412_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4925..6292)
DNA (1368bp) protein (456aa)
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA repair protein radA id=3836394 bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radA; DNA repair protein RadA
13_1_40cm_4_scaffold_13412_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6273..7463)
DNA (1191bp) protein (397aa)
Mce family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Mce family protein id=4675086 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Mce family protein
13_1_40cm_4_scaffold_13412_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7556..8299)
DNA (744bp) protein (248aa)
ABC transporter ATPase; K02065 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter; K02065 putative ABC transport system ATP-binding protein id=14625943 bin=bin7_NC10_sister species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
ABC transporter
13_1_40cm_4_scaffold_13412_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(8306..8419)
DNA (114bp) protein (38aa)
yrbE; toluene ABC transporter subunit membrane protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Similar to ABC-type transport system permease protein id=4092315 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
yrbE; toluene ABC transporter subunit membrane protein
Displaying 14 items

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