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13_1_40cm_4_scaffold_13505

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_13505_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1..594
DNA (594bp) protein (198aa)
50S ribosomal protein L3 id=1776815 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplC; 50S ribosomal protein L3 Tax=GWA2_Rokubacteria_73_35_curated
rplC; 50S ribosomal protein L3
13_1_40cm_4_scaffold_13505_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


1348..1548
DNA (201bp) protein (67aa)
50S ribosomal protein L25/L23; K02892 large subunit ribosomal protein L23 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L23 id=1776817 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosomal protein L25/L23
13_1_40cm_4_scaffold_13505_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


1555..2379
DNA (825bp) protein (275aa)
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L2 id=4799441 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
50S ribosomal protein L2
13_1_40cm_4_scaffold_13505_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


2389..2682
DNA (294bp) protein (98aa)
SSU ribosomal protein S19p (S15e) id=4666293 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=GWA2_Rokubacteria_73_35_curated
rpsS; 30S ribosomal protein S19
13_1_40cm_4_scaffold_13505_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


2687..3238
DNA (552bp) protein (184aa)
50S ribosomal protein L22 id=4666294 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=GWA2_Rokubacteria_73_35_curated
ribosomal protein L22, bacterial type
13_1_40cm_4_scaffold_13505_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


3241..3885
DNA (645bp) protein (215aa)
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=GWA2_Rokubacteria_73_35_curated
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 id=14625519 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
30S ribosomal protein S3
13_1_40cm_4_scaffold_13505_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


3905..4315
DNA (411bp) protein (137aa)
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L16 id=4716775 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplP; 50S ribosomal protein L16
13_1_40cm_4_scaffold_13505_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


4332..4538
DNA (207bp) protein (69aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L29 id=4666297 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L29
13_1_40cm_4_scaffold_13505_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


4525..4773
DNA (249bp) protein (83aa)
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S17 id=4666298 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S17
13_1_40cm_4_scaffold_13505_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


4778..5146
DNA (369bp) protein (123aa)
50S ribosomal protein L14 id=4666299 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplN; ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
rplN; 50S ribosomal protein L14
13_1_40cm_4_scaffold_13505_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


5349..5669
DNA (321bp) protein (107aa)
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L24 id=4666300 bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L24
13_1_40cm_4_scaffold_13505_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


5674..6357
DNA (684bp) protein (228aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L5 id=4799432 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplE; 50S ribosomal protein L5
13_1_40cm_4_scaffold_13505_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


6365..6550
DNA (186bp) protein (62aa)
50S ribosomal protein L5 id=4666301 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsZ; 30S ribosomal protein S14 Tax=GWA2_Rokubacteria_73_35_curated
rpsZ; 30S ribosomal protein S14
13_1_40cm_4_scaffold_13505_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


6556..6951
DNA (396bp) protein (132aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S8 id=4716768 bin=GWC2_Methylomirabilis_70_16 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpsH; 30S ribosomal protein S8
13_1_40cm_4_scaffold_13505_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


6962..7510
DNA (549bp) protein (183aa)
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L6 id=4666302 bin=GWA2_Methylomirabilis_73_35 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplF; 50S ribosomal protein L6
13_1_40cm_4_scaffold_13505_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


7507..7872
DNA (366bp) protein (122aa)
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L18 id=4716766 bin=GWC2_Methylomirabilis_70_16 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplR; 50S ribosomal protein L18
13_1_40cm_4_scaffold_13505_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


7895..8431
DNA (537bp) protein (179aa)
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S5 id=4666304 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S5
13_1_40cm_4_scaffold_13505_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


8412..8600
DNA (189bp) protein (63aa)
50S ribosomal protein L30 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L30 id=4666305 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmD; 50S ribosomal protein L30
13_1_40cm_4_scaffold_13505_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


8590..9057
DNA (468bp) protein (156aa)
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L15 id=4666306 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplO; 50S ribosomal protein L15
13_1_40cm_4_scaffold_13505_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


9054..10385
DNA (1332bp) protein (444aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein translocase subunit SecY id=4716762 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
secY; preprotein translocase subunit SecY
13_1_40cm_4_scaffold_13505_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10387..10779
DNA (393bp) protein (131aa)
adenylate kinase family protein (EC:2.7.4.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] id=14625534 bin=bin7_NC10_sister species=Thermodesulfobacterium thermophilum genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate kinase
13_1_40cm_4_scaffold_13505_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10829..10978
DNA (150bp) protein (50aa)
adenylate kinase family protein (EC:2.7.4.3) Tax=GWA2_Rokubacteria_73_35_curated
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3]
13_1_40cm_4_scaffold_13505_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10975..11724
DNA (750bp) protein (250aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] id=14625535 bin=bin7_NC10_sister species=Orenia marismortui genus=Orenia taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methionine aminopeptidase, type I (EC:3.4.11.18)
methionine aminopeptidase, type I Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_13505_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


12154..12594
DNA (441bp) protein (147aa)
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S13 id=4666312 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S13
13_1_40cm_4_scaffold_13505_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


12598..13005
DNA (408bp) protein (136aa)
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S11 id=4666313 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S11
13_1_40cm_4_scaffold_13505_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13906..14622
DNA (717bp) protein (239aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4666368 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_13505_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


14619..15092
DNA (474bp) protein (158aa)
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L17 id=1724741 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplQ; 50S ribosomal protein L17
13_1_40cm_4_scaffold_13505_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15300..15458)
DNA (159bp) protein (53aa)
dienelactone hydrolase-like enzyme (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Carboxymethylenebutenolidase (EC:3.1.1.45)
Dienelactone hydrolase-like enzyme id=1724740 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 28 items

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