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13_1_40cm_4_scaffold_17754

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_17754_1
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

1..669
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q84CW4_9BACT
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
13_1_40cm_4_scaffold_17754_2
CG_Elusi_04, Elusimicrobia, Bacteria

Not on your lists

704..1273
DNA (570bp) protein (190aa)
Transport-associated protein n=1 Tax=Brenneria sp. EniD312 RepID=G7LSL2_9ENTR
transport associated protein Tax=CG_Elusi_04
hypothetical protein
13_1_40cm_4_scaffold_17754_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

1338..2741
DNA (1404bp) protein (468aa)
putative UDP-N-acetylmuramate-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] Tax=RBG_16_RIF_WS3X_71_46_curated
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P0C4_9BACT id=5223295 bin=16ft_combo_ws3_JS1 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
13_1_40cm_4_scaffold_17754_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2800..3924)
DNA (1125bp) protein (375aa)
hypothetical protein id=2395057 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_17754_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3942..4859)
DNA (918bp) protein (306aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3995087 bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_17754_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4931..6610)
DNA (1680bp) protein (560aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18); K01886 glutaminyl-tRNA synthetase [EC:6.1.1.18] Tax=GWA2_Rokubacteria_73_35_curated
glnS; glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase id=4942496 bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_17754_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(6624..7019)
DNA (396bp) protein (132aa)
Protein PilT id=4362593 bin=GWC2_Methylomirabilis_70_24 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
pilT2; protein PilT Tax=GWA2_Rokubacteria_70_23_curated
twitching motility protein PilT
13_1_40cm_4_scaffold_17754_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7016..7255)
DNA (240bp) protein (80aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Gsl3799 protein id=4362591 bin=GWC2_Methylomirabilis_70_24 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_17754_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7897..9123
DNA (1227bp) protein (409aa)
Major facilitator superfamily MFS_1 id=4183754 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator superfamily MFS_1 Tax=GWA2_Rokubacteria_73_35_curated
major facilitator superfamily MFS_1
13_1_40cm_4_scaffold_17754_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

9133..9456
DNA (324bp) protein (108aa)
id=3864198 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=3864198 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_17754_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9453..11414
DNA (1962bp) protein (654aa)
peptidase S9 prolyl oligopeptidase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
peptidase S9 prolyl oligopeptidase id=12550217 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
peptidase
13_1_40cm_4_scaffold_17754_12
Rhodopirellula sp. SWK7, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

12095..12343
DNA (249bp) protein (83aa)
Uracil-DNA glycosylase superfamily protein n=1 Tax=Rhodopirellula sp. SWK7 RepID=M5TIR0_9PLAN
Uracil-DNA glycosylase superfamily protein {ECO:0000313|EMBL:EMI45436.1}; TaxID=595460 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source=
phage SPO1 DNA polymerase-like protein
13_1_40cm_4_scaffold_17754_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12354..12815
DNA (462bp) protein (154aa)
Putative uncharacterized protein id=4677000 bin=GWF2_Methylomirabilis_70_14 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_4_scaffold_17754_14
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12865..13590)
DNA (726bp) protein (242aa)
IPT/TIG domain-containing protein,collagen triple helix repeat protein n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZMK6_TERRK
triple helix repeat-containing collagen Tax=RBG_16_Deltaproteobacteria_49_23_curated
IPT/TIG domain-containing protein,collagen triple helix repeat protein
13_1_40cm_4_scaffold_17754_15
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(13629..14894)
DNA (1266bp) protein (422aa)
pyridoxal-dependent decarboxylase (EC:4.1.1.28)
PLP-dependent enzyme, glutamate decarboxylase id=17028652 bin=RBG_16_Aminicenantes_66_30 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
PLP-dependent enzyme, glutamate decarboxylase Tax=RBG_16_Aminicenantes_66_30_curated
13_1_40cm_4_scaffold_17754_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(15013..15945)
DNA (933bp) protein (311aa)
Inner-membrane translocator id=4646463 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
putative ABC transporter permiase component
13_1_40cm_4_scaffold_17754_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15942..16811)
DNA (870bp) protein (290aa)
ABC-type transporter, integral membrane subunit id=4646461 bin=GWA2_Methylomirabilis_73_35 species=Flexistipes sinusarabici genus=Flexistipes taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter integral membrane subunit; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
inner-membrane translocator
13_1_40cm_4_scaffold_17754_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16808..17521)
DNA (714bp) protein (238aa)
Fe(3+)-transporting ATPase (EC:3.6.3.30)
Salicylaldehyde dehydrogenase (Modular protein) id=4646459 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_17754_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17514..18239)
DNA (726bp) protein (242aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter related id=4646457 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
13_1_40cm_4_scaffold_17754_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18274..18636)
DNA (363bp) protein (121aa)
Putative uncharacterized protein id=4646454 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. ORS 375 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
amino acid ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_17754_21
unknown

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19088..19411
DNA (324bp) protein (108aa)

This feature has no annotations

13_1_40cm_4_scaffold_17754_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(19428..19745)
DNA (318bp) protein (106aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Blr6118 protein id=3732187 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_17754_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21382..22047
DNA (666bp) protein (222aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fatty oxidation complex, alpha subunit id=4279011 bin=GWA2_Methylomirabilis_73_35 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein
Displaying 23 items

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