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13_1_40cm_4_scaffold_2299

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Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2299_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1..576
DNA (576bp) protein (192aa)
ABC transporter permease; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC transporter permease protein id=3033655 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amino acid/amide ABC transporter ATP-binding protein 1, HAAT family
13_1_40cm_4_scaffold_2299_2
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

Not on your lists

comp(613..1020)
DNA (408bp) protein (136aa)
hypothetical protein Tax=RBG_13_Spirochaetes_68_11_curated
13_1_40cm_4_scaffold_2299_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1590..1787
DNA (198bp) protein (66aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_2299_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1947..2138
DNA (192bp) protein (64aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_2299_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2359..2826
DNA (468bp) protein (156aa)
TRAP-type C4-dicarboxylate transporter n=1 Tax=Rhodovulum sp. PH10 RepID=J6UIP5_9RHOB
dctQ1; TRAP transporter small permease subunit DctQ Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sialic acid TRAP transporter permease protein siaT
13_1_40cm_4_scaffold_2299_6
RBG_13_Deltaproteobacteria_49_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2830..4113
DNA (1284bp) protein (428aa)
TRAP dicarboxylate transporter subunit DctM; K11690 C4-dicarboxylate transporter, DctM subunit Tax=RBG_13_Deltaproteobacteria_49_15_curated
TRAP-type C4-dicarboxylate transport system, large permease component id=4555514 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
TRAP dicarboxylate transporter subunit DctM
13_1_40cm_4_scaffold_2299_7
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

4110..4598
DNA (489bp) protein (163aa)
hypothetical protein Tax=RBG_16_Chloroflexi_64_32_curated
13_1_40cm_4_scaffold_2299_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(4585..5340)
DNA (756bp) protein (252aa)
2-hydroxy-3-oxopropionate reductase Tax=GWA2_Rokubacteria_70_23_curated
Tartronate semialdehyde reductase id=4547685 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Rahnella taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
6-phosphogluconate dehydrogenase protein
13_1_40cm_4_scaffold_2299_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5914..7158)
DNA (1245bp) protein (415aa)
Extracellular ligand-binding receptor id=2654115 bin=GWC2_Methylomirabilis_70_24 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Extracellular ligand-binding receptor Tax=GWA2_Rokubacteria_70_23_curated
Extracellular ligand-binding receptor
13_1_40cm_4_scaffold_2299_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7336..8001
DNA (666bp) protein (222aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627784 bin=bin7_NC10_sister species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_2299_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8051..8545
DNA (495bp) protein (165aa)
id=4885132 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4885132 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2299_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8582..9268)
DNA (687bp) protein (229aa)
hypothetical protein; K07090 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4766447 bin=GWC2_Methylomirabilis_70_16 species=Thioalkalivibrio nitratireducens genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
glutamine amidotransferase
13_1_40cm_4_scaffold_2299_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9301..12231)
DNA (2931bp) protein (977aa)
glpC; D-lactate dehydrogenase (cytochrome) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glr3436 protein id=3830908 bin=GWF2_Methylomirabilis_70_14 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glpC; D-lactate dehydrogenase (cytochrome)
13_1_40cm_4_scaffold_2299_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12250..12756
DNA (507bp) protein (169aa)
Thiol-disulfide isomerase and thioredoxins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiol-disulfide isomerase and thioredoxins id=3830905 bin=GWF2_Methylomirabilis_70_14 species=Magnetospirillum sp. SO-1 genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
resA; thiol-disulfide oxidoreductase resA, stage III sporulation protein spoIIIH
13_1_40cm_4_scaffold_2299_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12757..13749)
DNA (993bp) protein (331aa)
ROK family protein; K00845 glucokinase [EC:2.7.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional repressor; K00845 glucokinase [EC:2.7.1.2] id=14627250 bin=bin7_NC10_sister species=Shinella zoogloeoides genus=Shinella taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
NagC; transcriptional regulator/sugar kinase
13_1_40cm_4_scaffold_2299_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13756..14499)
DNA (744bp) protein (248aa)
YdjC-like protein; K03478 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
YdjC-like protein id=3269465 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2299_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14496..15209)
DNA (714bp) protein (238aa)
Methylase id=3269468 bin=GWA2_Methylomirabilis_73_35 species=Methanothermobacter marburgensis genus=Methanothermobacter taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase Tax=GWA2_Rokubacteria_73_35_curated
methyltransferase-like protein
13_1_40cm_4_scaffold_2299_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15199..15510)
DNA (312bp) protein (104aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3269471 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2299_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(15638..15757)
DNA (120bp) protein (40aa)
id=14627246 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14627246 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_2299_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15784..17511)
DNA (1728bp) protein (576aa)
ggt; gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ggt; gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase id=3269474 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2299_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17529..18026)
DNA (498bp) protein (166aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3269477 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2299_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18023..20632)
DNA (2610bp) protein (870aa)
helicase Tax=GWC2_Rokubacteria_70_16_curated
Putative helicase id=3914659 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
helicase
13_1_40cm_4_scaffold_2299_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20748..21284
DNA (537bp) protein (179aa)
YCII-related id=3914668 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
YciI-like protein; K09780 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2299_24
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(21292..21987)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI00036841CE
putative PAS/PAC sensor protein Tax=RBG_16_Acidobacteria_70_10_curated
PAS/PAC sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_2299_25
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(21984..23006)
DNA (1023bp) protein (341aa)
cheB; chemotaxis Response Regulator protein CheB-glutamate methylesterase (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099, ECO:0000313|EMBL:CBE68879.1};; TaxID=671143 species="Bac
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGJ8_9BACT
13_1_40cm_4_scaffold_2299_26
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(23003..23587)
DNA (585bp) protein (195aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus M
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGJ9_9BACT
MCP proteins methylation stimulator CheD
13_1_40cm_4_scaffold_2299_27
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(23584..24465)
DNA (882bp) protein (294aa)
cheR; chemotaxis protein methyltransferase (EC:2.1.1.80) Tax=GWA2_Rokubacteria_70_23_curated
cheR; chemotaxis protein methyltransferase (EC:2.1.1.80)
Chemotaxis protein methyltransferase id=2322395 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2299_28
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(24443..24919)
DNA (477bp) protein (159aa)
Chemotaxis signal transduction protein CheW id=4764260 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cheW; chemotaxis signal transduction protein CheW; K03408 purine-binding chemotaxis protein CheW Tax=GWA2_Rokubacteria_70_23_curated
cheW; chemotaxis signal transduction protein CheW
13_1_40cm_4_scaffold_2299_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24922..26667)
DNA (1746bp) protein (582aa)
Histidine kinase, HAMP region:chemotaxis sensory transducer id=2322387 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine kinase, HAMP region:chemotaxis sensory transducer Tax=GWA2_Rokubacteria_73_35_curated
histidine kinase, HAMP region:chemotaxis sensory transducer
13_1_40cm_4_scaffold_2299_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26693..27271)
DNA (579bp) protein (193aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=2322386 bin=GWA2_Methylomirabilis_73_35 species=Thiorhodococcus drewsii genus=Thiorhodococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying items 1-30 of 34 in total

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