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13_1_40cm_4_scaffold_2320

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2320_1
unknown

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2..178
DNA (177bp) protein (59aa)

This feature has no annotations

13_1_40cm_4_scaffold_2320_2
unknown

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175..408
DNA (234bp) protein (78aa)

This feature has no annotations

13_1_40cm_4_scaffold_2320_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(478..1080)
DNA (603bp) protein (201aa)
Isochorismatase family protein id=3635570 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
isochorismatase Tax=GWC2_Rokubacteria_70_16_curated
isochorismatase hydrolase
13_1_40cm_4_scaffold_2320_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

1099..2541
DNA (1443bp) protein (481aa)
dihydropyrimidinase; K01464 dihydropyrimidinase [EC:3.5.2.2] id=14625343 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
dihydropyrimidinase; K01464 dihydropyrimidinase [EC:3.5.2.2] Tax=CSP1_6_Rokubacteria
dihydropyrimidinase (EC:3.5.2.2)
13_1_40cm_4_scaffold_2320_5
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

2564..3400
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I772_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM01110.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 1
13_1_40cm_4_scaffold_2320_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3435..3554)
DNA (120bp) protein (40aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4334200 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2320_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3623..3961
DNA (339bp) protein (113aa)
Histidine triad (HIT) protein id=4334202 bin=GWA2_Methylomirabilis_73_35 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=GWA2_Rokubacteria_73_35_curated
histidine triad (HIT) protein
13_1_40cm_4_scaffold_2320_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3954..5309
DNA (1356bp) protein (452aa)
adenylosuccinate lyase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Adenylosuccinate lyase id=2598310 bin=GWA2_Methylomirabilis_73_35 species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
adenylosuccinate lyase
13_1_40cm_4_scaffold_2320_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5444..5713)
DNA (270bp) protein (90aa)
Peptidase S46 id=2598295 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase S46 Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_2320_10
unknown

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5988..6767
DNA (780bp) protein (260aa)

This feature has no annotations

13_1_40cm_4_scaffold_2320_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6846..7364)
DNA (519bp) protein (173aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=2598292 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
collagen triple helix repeat protein
13_1_40cm_4_scaffold_2320_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7730..8995
DNA (1266bp) protein (422aa)
M16 family peptidase; K07263 zinc protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase M16 domain protein id=2598289 bin=GWA2_Methylomirabilis_73_35 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase M16 domain protein
13_1_40cm_4_scaffold_2320_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8992..10302
DNA (1311bp) protein (437aa)
processing peptidase (EC:3.4.24.64) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
processing peptidase (EC:3.4.24.64)
Peptidase M16B family, nonpeptidase-like protein id=2598286 bin=GWA2_Methylomirabilis_73_35 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2320_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10299..11015
DNA (717bp) protein (239aa)
Putative peptidase, S54 (Rhomboid) family id=2598285 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase, S54 (Rhomboid) family Tax=GWA2_Rokubacteria_73_35_curated
peptidase, S54 (Rhomboid) family
13_1_40cm_4_scaffold_2320_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11015..11824
DNA (810bp) protein (270aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] Tax=GWA2_Rokubacteria_73_35_curated
rRNA methylase; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] id=14627678 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rRNA methyltransferase
13_1_40cm_4_scaffold_2320_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11821..12678
DNA (858bp) protein (286aa)
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase id=2598283 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2320_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12738..14426
DNA (1689bp) protein (563aa)
DNA repair and genetic recombination protein id=2598282 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recN; DNA repair and genetic recombination protein; K03631 DNA repair protein RecN (Recombination protein N) Tax=GWA2_Rokubacteria_73_35_curated
recN; DNA repair protein RecN
13_1_40cm_4_scaffold_2320_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14455..17244
DNA (2790bp) protein (930aa)
secA; preprotein translocase subunit SecA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
secA; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA id=14627675 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
secA; preprotein translocase subunit SecA
13_1_40cm_4_scaffold_2320_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17372..20932
DNA (3561bp) protein (1187aa)
condensin subunit Smc; K03529 chromosome segregation protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chromosome partition protein Smc id=2874900 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
condensin subunit Smc
13_1_40cm_4_scaffold_2320_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21294..21785
DNA (492bp) protein (164aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4253320 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2320_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21782..22708
DNA (927bp) protein (309aa)
ftsY; signal recognition particle-docking protein ftsy; K03110 fused signal recognition particle receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Signal recognition particle receptor FtsY id=4253322 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ftsY; signal recognition particle-docking protein ftsy
13_1_40cm_4_scaffold_2320_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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22705..23808
DNA (1104bp) protein (368aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] T
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD id=4253324 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2320_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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23955..24557
DNA (603bp) protein (201aa)
RibC; riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=GWA2_Rokubacteria_73_35_curated
Riboflavin synthase alpha chain (Fragment) id=4253327 bin=GWA2_Methylomirabilis_73_35 species=Heliobacillus mobilis genus=Heliobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
riboflavin synthase subunit alpha
13_1_40cm_4_scaffold_2320_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24554..25765
DNA (1212bp) protein (404aa)
riboflavin biosynthesis protein RibA (EC:3.5.4.25); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_cura
riboflavin biosynthesis GTP cyclohydrolase II RibA (EC:3.5.4.25)
Riboflavin biosynthesis protein RibA id=4253329 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2320_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25767..26345
DNA (579bp) protein (193aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=GWA2_Rokubacteria_73_35_curated
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase id=4041875 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2320_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26346..26762
DNA (417bp) protein (139aa)
N utilization substance protein B homolog id=4041876 bin=GWA2_Methylomirabilis_73_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nusB; transcription antitermination factor NusB; K03625 N utilization substance protein B Tax=GWA2_Rokubacteria_73_35_curated
nusB; transcription antitermination factor NusB
13_1_40cm_4_scaffold_2320_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26771..27496
DNA (726bp) protein (242aa)
Metallophosphoesterase id=4041877 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphatase family protein Tax=GWA2_Rokubacteria_73_35_curated
phosphatase family protein
13_1_40cm_4_scaffold_2320_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27484..29016
DNA (1533bp) protein (511aa)
lnt; Apolipoprotein N-acyltransferase (ALP N-acyltransferase) (EC:2.3.1.-) Tax=GWA2_Rokubacteria_73_35_curated
Apolipoprotein N-acyltransferase id=4041878 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lnt-1; apolipoprotein N-acyltransferase
13_1_40cm_4_scaffold_2320_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

29131..30120
DNA (990bp) protein (330aa)
hypothetical protein; K02836 peptide chain release factor 2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptide chain release factor 2 id=4041879 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prfB; protein chain release factor B
13_1_40cm_4_scaffold_2320_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

30175..30474
DNA (300bp) protein (100aa)
lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=GWA2_Rokubacteria_73_35_curated
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase id=4041881 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 30 items

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