ggKbase home page

13_1_40cm_4_scaffold_4707

Search features with annotation key words

Displaying 19 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4707_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2..1135
DNA (1134bp) protein (378aa)
ribonucleotide-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ribonucleoside-diphosphate reductase (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase id=4411501 bin=GWC2_Methylomirabilis_70_24 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_4707_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1739..3040
DNA (1302bp) protein (434aa)
MFS transporter xanthine/uracil permease id=2720738 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MFS transporter xanthine/uracil permease; K06901 putative MFS transporter, AGZA family, xanthine/uracil permease Tax=GWA2_Rokubacteria_73_35_curated
MFS transporter xanthine/uracil permease
13_1_40cm_4_scaffold_4707_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3118..3519
DNA (402bp) protein (134aa)
cytochrome c family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cytochrome c class I id=2720737 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c class I
13_1_40cm_4_scaffold_4707_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3581..4534
DNA (954bp) protein (318aa)
Exopolyphosphatase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Exopolyphosphatase id=2720736 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Exopolyphosphatase
13_1_40cm_4_scaffold_4707_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

4566..5438
DNA (873bp) protein (291aa)
proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Proline dehydrogenase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SV36_9BACT
proline dehydrogenase
13_1_40cm_4_scaffold_4707_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5505..6035
DNA (531bp) protein (177aa)
HNH endonuclease Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
HNH endonuclease id=14625779 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
HNH endonuclease
13_1_40cm_4_scaffold_4707_7
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(6230..6952)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Halorubrum distributum JCM 9100 RepID=M0EDY5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KIY09552.1}; Flags: Fragment;; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
13_1_40cm_4_scaffold_4707_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7095..7985
DNA (891bp) protein (297aa)
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
UvrABC system protein B id=2720734 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
excinuclease ABC, B subunit
13_1_40cm_4_scaffold_4707_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7982..9823
DNA (1842bp) protein (614aa)
UvrABC system protein C id=2720733 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C Tax=GWA2_Rokubacteria_73_35_curated
uvrC; excinuclease ABC subunit C
13_1_40cm_4_scaffold_4707_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9831..10085
DNA (255bp) protein (85aa)
hypothetical protein id=2720732 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_4707_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


10174..12696
DNA (2523bp) protein (841aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] id=14625772 bin=bin7_NC10_sister species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
leuS; leucyl-tRNA ligase
13_1_40cm_4_scaffold_4707_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12717..13196
DNA (480bp) protein (160aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2720730 bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_4707_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13251..14204
DNA (954bp) protein (318aa)
holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA polymerase III subunit delta (EC:2.7.7.7)
Putative DNA polymerase III, delta subunit id=2720729 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Eggerthella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_4707_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14201..15568
DNA (1368bp) protein (456aa)
Putative uncharacterized protein id=2720728 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_4707_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(15559..15810)
DNA (252bp) protein (84aa)
30S ribosomal protein S20 id=2720727 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=GWA2_Rokubacteria_73_35_curated
30S ribosomal protein S20
13_1_40cm_4_scaffold_4707_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15894..17498
DNA (1605bp) protein (535aa)
integral membrane protein MviN; K03980 virulence factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integral membrane protein MviN id=2720726 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane protein MviN
13_1_40cm_4_scaffold_4707_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

17592..18476
DNA (885bp) protein (295aa)
XerD; site-specific recombinase XerD; K04763 integrase/recombinase XerD id=14625766 bin=bin7_NC10_sister species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
XerD; site-specific recombinase XerD; K04763 integrase/recombinase XerD Tax=CSP1_6_Rokubacteria
tyrosine recombinase XerD
13_1_40cm_4_scaffold_4707_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

18473..20122
DNA (1650bp) protein (550aa)
hypothetical protein; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] id=14625765 bin=bin7_NC10_sister species=Aminomonas paucivorans genus=Aminomonas taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] Tax=CSP1_6_Rokubacteria
Polynucleotide adenylyltransferase region
13_1_40cm_4_scaffold_4707_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20124..21725
DNA (1602bp) protein (534aa)
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2) id=14625764 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2)
Displaying 19 items

View Taxonomy