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13_1_40cm_4_scaffold_5105

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5105_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..675)
DNA (675bp) protein (225aa)
S-adenosylmethionine; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
S-adenosylmethionine:tRNA ribosyltransferase-isomerase id=4319702 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
13_1_40cm_4_scaffold_5105_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

879..1220
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q0G3_9RHOO
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_5105_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1224..2057
DNA (834bp) protein (278aa)
iron permease FTR1; K07243 high-affinity iron transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iron permease FTR1; K07243 high-affinity iron transporter id=14630789 bin=bin9_gal15 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
high-affinity Fe2+/Pb2+ permease
13_1_40cm_4_scaffold_5105_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2054..2233
DNA (180bp) protein (60aa)
Conserved domain protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
13_1_40cm_4_scaffold_5105_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2292..2624)
DNA (333bp) protein (111aa)
export-related chaperone CsaA; K06878 tRNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Export-related chaperone CsaA id=4284345 bin=GWC2_Methylomirabilis_70_16 species=Paracoccus denitrificans genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
csaA; export-related chaperone CsaA
13_1_40cm_4_scaffold_5105_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2886..4067)
DNA (1182bp) protein (394aa)
SpoIID/LytB domain-containing protein; K06381 stage II sporulation protein D Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SpoIID/LytB domain protein id=4319706 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cell division protein, SpoIID family
13_1_40cm_4_scaffold_5105_7
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4064..4288)
DNA (225bp) protein (75aa)
Uncharacterized protein n=2 Tax=Geobacter metallireducens RepID=Q39XM9_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB30995.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallire
13_1_40cm_4_scaffold_5105_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4285..5328)
DNA (1044bp) protein (348aa)
ruvB; Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Holliday junction ATP-dependent DNA helicase RuvB id=4319707 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ruvB; Holliday junction DNA helicase RuvB
13_1_40cm_4_scaffold_5105_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5325..5975)
DNA (651bp) protein (217aa)
DNA recombination protein RuvA domain I; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=GWA2_Rokubacteria_73_35_curated
DNA recombination protein RuvA domain I; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] id=14626993 bin=bin7_NC10_sister species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DNA recombination protein RuvA domain I
13_1_40cm_4_scaffold_5105_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6187..6726)
DNA (540bp) protein (180aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] Tax=GWC2_Rokubacteria_70_16_curated
Crossover junction endodeoxyribonuclease RuvC id=4404045 bin=GWC2_Methylomirabilis_70_24 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
crossover junction endodeoxyribonuclease RuvC
13_1_40cm_4_scaffold_5105_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6674..7426)
DNA (753bp) protein (251aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Probable transcriptional regulatory protein DAMO_2401 id=4284351 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_5105_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7431..8417)
DNA (987bp) protein (329aa)
thioesterase superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thioesterase superfamily protein id=3467151 bin=GWA2_Methylomirabilis_73_35 species=Vulcanisaeta moutnovskia genus=Vulcanisaeta taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioesterase superfamily protein
13_1_40cm_4_scaffold_5105_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8534..10105)
DNA (1572bp) protein (524aa)
heme-binding protein A (Hemin-binding lipoprotein); K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Heme-binding protein A (Hemin-binding lipoprotein) id=3467128 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heme-binding protein A (Hemin-binding lipoprotein)
13_1_40cm_4_scaffold_5105_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

10401..12209
DNA (1809bp) protein (603aa)
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein id=14627257 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_5105_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12298..13797
DNA (1500bp) protein (500aa)
proteasome component Tax=GWA2_Rokubacteria_73_35_curated
proteasome component id=14627258 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
proteasome component
13_1_40cm_4_scaffold_5105_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13803..14621
DNA (819bp) protein (273aa)
proteasome A-type and B-type Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative proteasome A-type and B-type id=2228958 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
proteasome A-type and B-type
13_1_40cm_4_scaffold_5105_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14626..15318
DNA (693bp) protein (231aa)
proteasome A-type and B-type Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative proteasome A-type and B-type id=2228956 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
proteasome A-type and B-type
13_1_40cm_4_scaffold_5105_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15359..16714
DNA (1356bp) protein (452aa)
hypothetical protein; K13571 proteasome accessory factor A [EC:6.3.2.-] id=14627261 bin=bin7_NC10_sister species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
pafA; proteasome accessory factor PafA (EC:6.3.2.-)
putative proteasome component Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_5105_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16929..17390
DNA (462bp) protein (154aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14627436 bin=bin7_NC10_sister species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_5105_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17415..17834
DNA (420bp) protein (140aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2228950 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_5105_21
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17858..18445)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Ralstonia solanacearum RepID=UPI00036F7B9F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJW47600.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolily
13_1_40cm_4_scaffold_5105_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(18442..19968)
DNA (1527bp) protein (509aa)
hutH; hypothetical protein; K01745 histidine ammonia-lyase [EC:4.3.1.3] Tax=GWA2_Rokubacteria_70_23_curated
Histidine ammonia-lyase id=4631976 bin=GWF2_Methylomirabilis_70_14 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hutH; hypothetical protein
13_1_40cm_4_scaffold_5105_23
Bacillus clausii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19941..21251)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Bacillus clausii (strain KSM-K16) RepID=Q5WCQ0_BACSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD65860.1}; TaxID=66692 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus clausii (strain KSM-K16).;"
13_1_40cm_4_scaffold_5105_24
unknown

Not on your lists

comp(21415..21483)
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 24 items

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