ggKbase home page

13_1_40cm_4_scaffold_7373

Search features with annotation key words

Displaying 22 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_7373_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(155..1057)
DNA (903bp) protein (301aa)
ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=CSP1_6_Rokubacteria
ABC transporter permease; K02034 peptide/nickel transport system permease protein id=14625228 bin=bin7_NC10_sister species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_7373_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1057..2061)
DNA (1005bp) protein (335aa)
dipeptide/oligopeptide/nickel ABC transporter permease id=14625229 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
dipeptide/oligopeptide/nickel ABC transporter permease Tax=CSP1_6_Rokubacteria
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_7373_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2090..3691)
DNA (1602bp) protein (534aa)
oligopeptide/dipeptide ABC transporter peptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein id=14625230 bin=bin7_NC10_sister species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
oligopeptide/dipeptide ABC transporter peptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
oligopeptide/dipeptide ABC transporter peptide-binding protein
13_1_40cm_4_scaffold_7373_4
unknown

Not on your lists

comp(3925..4326)
DNA (402bp) protein (134aa)

This feature has no annotations

13_1_40cm_4_scaffold_7373_5
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

Not on your lists

comp(4396..4605)
DNA (210bp) protein (70aa)
Tax=RBG_13_Spirochaetes_68_11_curated
13_1_40cm_4_scaffold_7373_6
unknown

Not on your lists

5420..5818
DNA (399bp) protein (133aa)

This feature has no annotations

13_1_40cm_4_scaffold_7373_7
unknown

Not on your lists

comp(5815..6543)
DNA (729bp) protein (243aa)

This feature has no annotations

13_1_40cm_4_scaffold_7373_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6905..7720
DNA (816bp) protein (272aa)
OmpA/MotB protein; K03640 peptidoglycan-associated lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptidoglycan-associated lipoprotein id=2546000 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB domain protein
13_1_40cm_4_scaffold_7373_9
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7756..8655)
DNA (900bp) protein (300aa)
hypothetical protein id=14429739 bin=bin3_NC10 species=Desulfitobacterium hafniense genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
alpha/beta hydrolase
Tax=BJP_IG2102_Syntrophobacterales_60_12
13_1_40cm_4_scaffold_7373_10
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9032..10153)
DNA (1122bp) protein (374aa)
hypothetical protein; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=RBG_16_Gamma2_60_9_curated
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE2DC
methionine synthase
13_1_40cm_4_scaffold_7373_11
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10177..10929)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037C098F
Uncharacterized protein {ECO:0000313|EMBL:ETW98721.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
cyclopentanol dehydrogenase
13_1_40cm_4_scaffold_7373_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10926..12134)
DNA (1209bp) protein (403aa)
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases n=1 Tax=uncultured alpha proteobacterium HF0130_20P23 RepID=E0XTA1_9PROT
limonene 1,2-monooxygenase Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
luciferase family protein
13_1_40cm_4_scaffold_7373_13
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12280..13974
DNA (1695bp) protein (565aa)
Quinoprotein ethanol dehydrogenase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZSD4_9BRAD
Alcohol dehydrogenase {ECO:0000313|EMBL:ETW98770.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
quinoprotein ethanol dehydrogenase
13_1_40cm_4_scaffold_7373_14
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14076..14348
DNA (273bp) protein (91aa)
Mox cytochrome c like protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SSQ4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ETX08108.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Mox/cytochrome c like protein
13_1_40cm_4_scaffold_7373_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

14379..15608
DNA (1230bp) protein (410aa)
sarcosine dehydrogenase Tax=GWC2_Rokubacteria_70_16_curated
FAD dependent oxidoreductase id=4840598 bin=GWC2_Methylomirabilis_70_16 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
aminomethyl transferase family protein
13_1_40cm_4_scaffold_7373_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15635..16033)
DNA (399bp) protein (133aa)
id=14626178 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=14626178 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_7373_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16128..16952
DNA (825bp) protein (275aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YZ5_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
hypothetical protein
13_1_40cm_4_scaffold_7373_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17134..17448
DNA (315bp) protein (105aa)
RNP-1 like RNA-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
RNP-1 like RNA-binding protein id=1884756 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNP-1 like RNA-binding protein
13_1_40cm_4_scaffold_7373_19
unknown

Not on your lists

comp(17349..17555)
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_4_scaffold_7373_20
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(17552..18349)
DNA (798bp) protein (266aa)
Histidine kinase (EC:2.7.13.3) Tax=GWC2_RIF_CHLX_73_18_curated
Putative Histidine kinase id=2877061 bin=GWC2_Chloroflexi_73_18 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
PAS sensor protein
13_1_40cm_4_scaffold_7373_21
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18899..19606)
DNA (708bp) protein (236aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T959_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KHD20121.1}; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sacch
histidine kinase family protein
13_1_40cm_4_scaffold_7373_22
unknown

Not on your lists

19796..19903
DNA (108bp) protein (36aa)

This feature has no annotations

Displaying 22 items

View Taxonomy