ggKbase home page

13_1_40cm_4_scaffold_9792

Search features with annotation key words

Displaying 17 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_9792_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..863)
DNA (861bp) protein (287aa)
Luciferase-like, subgroup id=3362957 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase-like protein Tax=GWA2_Rokubacteria_73_35_curated
luciferase-like protein
13_1_40cm_4_scaffold_9792_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(867..1634)
DNA (768bp) protein (256aa)
Enoyl-CoA hydratase/isomerase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Enoyl-CoA hydratase/isomerase id=3362958 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Sulfolobus taxon_order=Sulfolobales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase/isomerase
13_1_40cm_4_scaffold_9792_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1631..3202)
DNA (1572bp) protein (524aa)
menE1; 2-succinylbenzoate--CoA ligase (EC:6.2.1.26) Tax=GWA2_Rokubacteria_73_35_curated
AMP-dependent synthetase and ligase id=3362959 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AMP-dependent synthetase and ligase
13_1_40cm_4_scaffold_9792_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3199..4227)
DNA (1029bp) protein (343aa)
putative NAD-dependent alcohol dehydrogenase (EC:1.1.1.1) Tax=GWA2_Rokubacteria_73_35_curated
putative NAD-dependent alcohol dehydrogenase (EC:1.1.1.1)
Putative NAD-dependent alcohol dehydrogenase id=3362960 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_9792_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4241..5566)
DNA (1326bp) protein (442aa)
Phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=GWA2_Rokubacteria_73_35_curated
Phenylacetate--CoA ligase (EC:6.2.1.30)
Phenylacetate--CoA ligase id=4585789 bin=GWF2_Methylomirabilis_70_14 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_9792_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5578..6018)
DNA (441bp) protein (147aa)
carbon monoxide dehydrogenase subunit G; K09386 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Carbon monoxide dehydrogenase subunit G id=3362961 bin=GWA2_Methylomirabilis_73_35 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carbon monoxide dehydrogenase subunit G
13_1_40cm_4_scaffold_9792_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6067..7266)
DNA (1200bp) protein (400aa)
aspartate aminotransferase (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aatA; aspartate aminotransferase A (AspAT) (EC:2.6.1.1)
Aspartate aminotransferase A (AspAT) id=4834180 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_9792_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7300..7785)
DNA (486bp) protein (162aa)
pantetheine-phosphate adenylyltransferase; K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Phosphopantetheine adenylyltransferase id=3362963 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphopantetheine adenylyltransferase
13_1_40cm_4_scaffold_9792_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7796..8254)
DNA (459bp) protein (153aa)
Methyltransferase id=3362964 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase Tax=GWA2_Rokubacteria_73_35_curated
methyltransferase
13_1_40cm_4_scaffold_9792_10
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(8463..10211)
DNA (1749bp) protein (583aa)
ATP-dependent DNA helicase RecG n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A7C49
Uncharacterized protein {ECO:0000313|EMBL:KIJ71235.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
hypothetical protein
13_1_40cm_4_scaffold_9792_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


10470..10661
DNA (192bp) protein (64aa)
50S ribosomal protein L28 id=2537538 bin=GWC2_Methylomirabilis_70_24 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=GWA2_Rokubacteria_70_23_curated
50S ribosomal protein L28
13_1_40cm_4_scaffold_9792_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10835..11884)
DNA (1050bp) protein (350aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14627009 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_9792_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11975..13669)
DNA (1695bp) protein (565aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627504 bin=bin7_NC10_sister species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_9792_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13689..14063)
DNA (375bp) protein (125aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4319695 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_9792_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14171..16318)
DNA (2148bp) protein (716aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
relA; GTP pyrophosphokinase (EC:2.7.6.5) id=14627007 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
relA; GTP pyrophosphokinase (EC:2.7.6.5)
13_1_40cm_4_scaffold_9792_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16361..16726)
DNA (366bp) protein (122aa)
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protein translocase subunit SecF id=4319698 bin=GWA2_Methylomirabilis_73_35 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein-export membrane protein SecF
13_1_40cm_4_scaffold_9792_17
unknown

Not on your lists

16968..17177
DNA (210bp) protein (70aa)

This feature has no annotations

Displaying 17 items

View Taxonomy