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13_1_40cm_4_scaffold_15

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_15_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2..706
DNA (705bp) protein (235aa)
ABC transporter transmembrane region
ABC transporter transmembrane region {ECO:0000313|EMBL:AHG92935.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ABC transporter related protein id=3896431 bin=GWF2_Lentisphaerae_52_8 species=Planctomyces limnophilus genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
13_1_40cm_4_scaffold_15_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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752..1252
DNA (501bp) protein (167aa)
protein of unknown function DUF1854
Uncharacterized protein {ECO:0000313|EMBL:AHG92934.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Putative uncharacterized protein id=4992536 bin=GWA2__Bacteriovorax-rel_49_15 species=Planctomyces limnophilus genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
13_1_40cm_4_scaffold_15_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1311..2138)
DNA (828bp) protein (276aa)
AAA ATPase
AAA ATPase {ECO:0000313|EMBL:AHG88588.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
AAA ATPase id=5026645 bin=GWA2__Bacteriovorax-rel_49_15 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
13_1_40cm_4_scaffold_15_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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2410..2991
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6V408_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CDM67024.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_4_scaffold_15_5
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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3025..3828
DNA (804bp) protein (268aa)
Zn-dependent hydrolase, glyoxylase id=24456897 bin=RBG_19FT_COMBO_GAL15_69_19 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
Zn-dependent hydrolase, glyoxylase Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
Zn-dependent hydrolase, glyoxylase
13_1_40cm_4_scaffold_15_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(3825..4844)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB85_GEMAT
hypothetical protein; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
phosphoesterase RecJ domain protein
13_1_40cm_4_scaffold_15_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(5015..6199)
DNA (1185bp) protein (395aa)
Amino acid permease n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UAV9_MYXSD
amino acid permease Tax=GWC2_Gemmatimonadetes_71_10_curated
amino acid permease
13_1_40cm_4_scaffold_15_8
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6591..7370)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Microbulbifer variabilis RepID=UPI00037C0131
response regulator of the LytR/AlgR family Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
LytT family two-component response regulator
13_1_40cm_4_scaffold_15_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(7388..8824)
DNA (1437bp) protein (479aa)
Amino acid permease n=1 Tax=Burkholderia sp. SJ98 RepID=K8R5K0_9BURK
amino acid transporter Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
amino acid permease-associated region
13_1_40cm_4_scaffold_15_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(8902..9480)
DNA (579bp) protein (193aa)
TonB-dependent outer membrane receptor n=1 Tax=Gramella forsetii (strain KT0803) RepID=A0M0T4_GRAFK
TonB-dependent outer membrane protein, SusC/RagA
TonB-dependent outer membrane protein, SusC/RagA {ECO:0000313|EMBL:AHG89359.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_15_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(9848..11305)
DNA (1458bp) protein (486aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB87_GEMAT
13_1_40cm_4_scaffold_15_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11314..11643)
DNA (330bp) protein (110aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=GWC2_Gemmatimonadetes_71_10_curated
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB89_GEMAT
hypothetical protein
13_1_40cm_4_scaffold_15_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11640..12734)
DNA (1095bp) protein (365aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_4_scaffold_15_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12745..14325
DNA (1581bp) protein (527aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB94_GEMAT
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosp
13_1_40cm_4_scaffold_15_15
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

14391..15062
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB95_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39501.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_1_40cm_4_scaffold_15_16
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

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15050..15745
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000381E338
ABC transporter permease; K05773 tungstate transport system permease protein Tax=RBG_19FT_COMBO_JS1_35_14_curated
binding-protein-dependent transport systems inner membrane component
13_1_40cm_4_scaffold_15_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

15738..16754
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037E4F05
ABC transporter; K06857 tungstate transport system ATP-binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
ABC transporter
13_1_40cm_4_scaffold_15_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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16757..17176
DNA (420bp) protein (140aa)
hypothetical protein; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=GWC2_Gemmatimonadetes_71_10_curated
6-pyruvoyl tetrahydropterin synthase family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB96_GEMAT
6-pyruvoyl tetrahydropterin synthase and hypothetical protein
13_1_40cm_4_scaffold_15_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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17334..18053
DNA (720bp) protein (240aa)
Formate dehydrogenase accessory protein FdhD n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EI48_GEOBB
formate dehydrogenase family accessory protein (FdhD) Tax=GWC2_Gemmatimonadetes_71_10_curated
nitrate assimilation protein NarQ or formate dehydrogenase accessory protein FdhD
13_1_40cm_4_scaffold_15_20
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18050..18466
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI00036BA705
CoA-binding protein {ECO:0000313|EMBL:KJA10691.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
CoA-binding protein
13_1_40cm_4_scaffold_15_21
unknown

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18467..19276
DNA (810bp) protein (270aa)

This feature has no annotations

13_1_40cm_4_scaffold_15_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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19279..19878
DNA (600bp) protein (200aa)
molybdopterin-guanine dinucleotide biosynthesis protein A; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Molybdopterin-guanine dinucleotide biosynthesis protein A
Probable molybdenum cofactor guanylyltransferase id=3877310 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_15_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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19860..20393
DNA (534bp) protein (178aa)
Molybdopterin guanine dinucleotide biosynthesis accessory protein MobB n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RHH0_MOOTA
molybdopterin-guanine dinucleotide biosynthesis protein B; K03753 molybdopterin-guanine dinucleotide biosynthesis protein B Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
molybdopterin-guanine dinucleotide biosynthesis protein B
13_1_40cm_4_scaffold_15_24
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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20395..21648
DNA (1254bp) protein (418aa)
molybdenum cofactor synthesis domain-containing protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
MoeA domain protein domain I and II
Molybdopterin biosynthesis MoeA protein id=2233857 bin=GWB2_Proteobacteria_55_19 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
13_1_40cm_4_scaffold_15_25
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

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21649..22476
DNA (828bp) protein (276aa)
Diguanylate cyclase id=4516555 bin=GWC2_Nitrospirae-rel_56_14 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
diguanylate cyclase Tax=GWC2_Nitrospirae_56_14_curated
diguanylate cyclase
13_1_40cm_4_scaffold_15_26
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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comp(22507..23202)
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6E7_9BACT id=5223510 bin=16ft_combo_ws3_JS1 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
diguanylate cyclase Tax=RBG_16_Chloroflexi_63_12_curated
diguanylate cyclase
13_1_40cm_4_scaffold_15_27
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

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comp(23721..25397)
DNA (1677bp) protein (559aa)
electron-transferring-flavoprotein dehydrogenase; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
etfD; electron transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) (EC:1.5.5.1)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MPW0_9BACT
13_1_40cm_4_scaffold_15_28
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(25390..26364)
DNA (975bp) protein (325aa)
etfA; electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit Tax=GWC2_Gemmatimonadetes_71_10_curated
Electron transfer flavoprotein alpha/beta-subunit
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit id=24469728 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_4_scaffold_15_29
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(26361..27113)
DNA (753bp) protein (251aa)
Electron transfer flavoprotein subunit beta n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABA3_GEMAT
etfB; electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
etfB; electron transfer flavoprotein subunit beta
13_1_40cm_4_scaffold_15_30
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27247..29364)
DNA (2118bp) protein (706aa)
TonB-dependent receptor n=1 Tax=Burkholderia cenocepacia (strain MC0-3) RepID=B1K6Y1_BURCC
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ACA94285.1}; TaxID=406425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex
Displaying items 1-30 of 47 in total

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