ggKbase home page

13_1_40cm_4_scaffold_665

Search features with annotation key words

Displaying items 1-30 of 103 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_665_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

2..424
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI0003642E81
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_4_scaffold_665_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

421..1029
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HI69_ANADF
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_4_scaffold_665_3
unknown

Not on your lists

1426..2301
DNA (876bp) protein (292aa)

This feature has no annotations

13_1_40cm_4_scaffold_665_4
unknown

Not on your lists

comp(2542..2712)
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_4_scaffold_665_5
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2727..3740)
DNA (1014bp) protein (338aa)
Collagenase n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VZU8_9ACTO
collagenase
Collagenase {ECO:0000313|EMBL:AGZ41245.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
13_1_40cm_4_scaffold_665_6
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

3757..4158
DNA (402bp) protein (134aa)
Radical SAM domain protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MIR7_RHOM4
radical SAM protein
Radical SAM domain protein {ECO:0000313|EMBL:ACY48375.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus m
13_1_40cm_4_scaffold_665_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4023..4505)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UAW7_MYXSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG87628.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_665_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4502..5557)
DNA (1056bp) protein (352aa)
succinylglutamate desuccinylase/aspartoacylase Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein id=8265623 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
succinylglutamate desuccinylase/aspartoacylase
13_1_40cm_4_scaffold_665_9
S_OP1_64_32, KB1, Bacteria

Not on your lists

5649..6575
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00035CE211
Transporter, MscS family Tax=S_OP1_64_32
mechanosensitive ion channel protein MscS
13_1_40cm_4_scaffold_665_10
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6582..6926)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI000311DA35
antibiotic biosynthesis monooxygenase Tax=RBG_16_Gammaproteobacteria_66_13_curated
antibiotic biosynthesis monooxygenase
13_1_40cm_4_scaffold_665_11
Brevibacillus brevis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6892..7251)
DNA (360bp) protein (120aa)
Putative uncharacterized protein n=1 Tax=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) RepID=C0ZJ38_BREBN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAH45413.1}; TaxID=358681 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus brevis (strain
13_1_40cm_4_scaffold_665_12
Peptococcaceae bacterium BRH_c4b, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7277..8257)
DNA (981bp) protein (327aa)
Putative membrane protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2EFN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJS17429.1}; TaxID=1629717 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4b.;"
protein of unknown function DUF6 transmembrane
13_1_40cm_4_scaffold_665_13
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8259..8744)
DNA (486bp) protein (162aa)
Transcriptional regulator, AsnC family n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P479_9BACT
AsnC family transcriptional regulator Tax=GWD2_Deltaproteobacteria_55_8_curated
AsnC family transcriptional regulator
13_1_40cm_4_scaffold_665_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

8903..9718
DNA (816bp) protein (272aa)
Putative uncharacterized protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SUC4_9BACT
Conserved hypothetical protein CHP00268
Uncharacterized protein {ECO:0000313|EMBL:AHG90451.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_665_15
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9715..10272
DNA (558bp) protein (186aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=370438 species="Ba
2'-5' RNA ligase n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D3U3_PELTS
LigT; 2'-5' RNA ligase
13_1_40cm_4_scaffold_665_16
unknown

Not on your lists

10426..10890
DNA (465bp) protein (155aa)

This feature has no annotations

13_1_40cm_4_scaffold_665_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

10887..12275
DNA (1389bp) protein (463aa)
Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7J8_GEMAT
putative NtrC family two-component response regulator Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative NtrC family two-component response regulator
13_1_40cm_4_scaffold_665_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12275..12772
DNA (498bp) protein (166aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7J9_GEMAT
hypothetical membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical membrane protein
13_1_40cm_4_scaffold_665_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12777..14267
DNA (1491bp) protein (497aa)
Aldehyde dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7K0_GEMAT
Aldehyde Dehydrogenase
Aldehyde Dehydrogenase {ECO:0000313|EMBL:AHG90457.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_665_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

14634..15404
DNA (771bp) protein (257aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Signal peptidase I n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC84_GEMAT
signal peptidase I
13_1_40cm_4_scaffold_665_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

15506..16333
DNA (828bp) protein (276aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7K2_GEMAT
RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor Tax=RBG_16_Gemmatimonadetes_66_8_curated
RNA polymerase sigma factor, sigma-70 family
13_1_40cm_4_scaffold_665_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

16361..16864
DNA (504bp) protein (168aa)
hypothetical protein; K09767 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
UPF0234 protein yajQ
hypothetical protein; K09767 hypothetical protein id=12555050 bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_4_scaffold_665_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

16861..18177
DNA (1317bp) protein (439aa)
hypothetical protein; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7K6_GEMAT
Ribosomal protein S12 methylthiotransferase rimO
13_1_40cm_4_scaffold_665_24
Cyanobium sp. PCC 7001, Cyanobium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

18174..19460
DNA (1287bp) protein (429aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, EC
hemL; glutamate-1-semialdehyde aminomutase HemL (EC:5.4.3.8)
glutamate-1-semialdehyde aminotransferase n=1 Tax=Synechococcus sp. CB0205 RepID=UPI00020024CE
13_1_40cm_4_scaffold_665_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19690..20679
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7K8_GEMAT
hypothetical protein; K06381 stage II sporulation protein D Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
SpoIID/LytB domain protein
13_1_40cm_4_scaffold_665_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

20663..21400
DNA (738bp) protein (246aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_665_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21397..22404
DNA (1008bp) protein (336aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7K9_GEMAT
putative oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
oxidoreductase domain protein
13_1_40cm_4_scaffold_665_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

22401..23936
DNA (1536bp) protein (512aa)
lnt; apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MI57_9BACT
lnt; apolipoprotein N-acyltransferase
13_1_40cm_4_scaffold_665_29
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

24487..26028
DNA (1542bp) protein (514aa)
5-oxoprolinase (EC:3.5.2.9)
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:ABG05338.1}; EC=3.5.2.9 {ECO:0000313|EMBL:ABG05338.1};; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterin
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ATE0_RUBXD
13_1_40cm_4_scaffold_665_30
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

26025..27569
DNA (1545bp) protein (515aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ATD9_RUBXD
Hydantoinase B/oxoprolinase
Displaying items 1-30 of 103 in total

View Taxonomy