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13_1_40cm_4_scaffold_18276

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_18276_1
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..236)
DNA (234bp) protein (78aa)
hypothetical protein n=2 Tax=Methylophilus RepID=UPI000379BA83
ureF; urease accessory protein UreF; K03188 urease accessory protein Tax=CG_Rhodocyc_01
ureF; urease accessory protein UreF
13_1_40cm_4_scaffold_18276_2
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(233..730)
DNA (498bp) protein (166aa)
Urease accessory protein UreE n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z467_9NEIS
ureE; urease accessory protein UreE; K03187 urease accessory protein Tax=RBG_16_Betaproteobacteria_58_11_curated
ureE; urease accessory protein UreE
13_1_40cm_4_scaffold_18276_3
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(736..2433)
DNA (1698bp) protein (566aa)
ureC; urease subunit alpha; K01428 urease subunit alpha [EC:3.5.1.5] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Urease subunit alpha n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRP2_ACCPU
ureC; urease subunit alpha
13_1_40cm_4_scaffold_18276_4
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2430..2810)
DNA (381bp) protein (127aa)
Urease subunit beta {ECO:0000255|HAMAP-Rule:MF_01954}; EC=3.5.1.5 {ECO:0000255|HAMAP-Rule:MF_01954};; Urea amidohydrolase subunit beta {ECO:0000255|HAMAP-Rule:MF_01954}; TaxID=62928 species="Bacteria;
Urease subunit beta n=1 Tax=Azoarcus sp. (strain BH72) RepID=URE2_AZOSB
urease subunit beta
13_1_40cm_4_scaffold_18276_5
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2807..3109)
DNA (303bp) protein (101aa)
ureA; urease subunit gamma (EC:3.5.1.5)
Urease subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850};; Urea amidohydrolase subunit gamma {
urease subunit gamma n=1 Tax=Methyloversatilis sp. NVD RepID=UPI00037E74F0
13_1_40cm_4_scaffold_18276_6
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3130..3732)
DNA (603bp) protein (201aa)
ureD; urease accessory protein Tax=RBG_16_Betaproteobacteria_66_20_curated
Urease accessory protein UreD id=1324197 bin=GWE1_T_denit_62_9 species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ureD; putative urease accessory protein UreD
13_1_40cm_4_scaffold_18276_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4022..4894)
DNA (873bp) protein (291aa)
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQG6_SIDLE
ribosomal RNA small subunit methyltransferase I Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
uroporphyrin-III C/tetrapyrrole methyltransferase
13_1_40cm_4_scaffold_18276_8
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4913..6115
DNA (1203bp) protein (401aa)
LppC family lipoprotein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B789_9PROT
LppC family lipoprotein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
LppC family lipoprotein
13_1_40cm_4_scaffold_18276_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6112..6453
DNA (342bp) protein (114aa)
UPF0102 protein C667_21114 n=1 Tax=Thauera phenylacetica B4P RepID=N6ZKE3_9RHOO
hypothetical protein; K07460 putative endonuclease Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
hypothetical protein
13_1_40cm_4_scaffold_18276_10
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6493..7086
DNA (594bp) protein (198aa)
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isom
gmhA; phosphoheptose isomerase (EC:5.3.-.-)
phosphoheptose isomerase n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00035ED5C6
13_1_40cm_4_scaffold_18276_11
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7286..7630
DNA (345bp) protein (115aa)
Transport-associated protein n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZDI6_9PROT
putative periplasmic or secreted lipoprotein
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:BAO30689.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="
13_1_40cm_4_scaffold_18276_12
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7627..8151
DNA (525bp) protein (175aa)
Probable cytidylyltransferase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P2F3_AROAE
rfaE bifunctional protein Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
cytidyltransferase-related
13_1_40cm_4_scaffold_18276_13
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8190..8504
DNA (315bp) protein (105aa)
rhodanese-like protein
rhodanese-like protein id=12497718 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Rhodanese-like protein {ECO:0000313|EMBL:BAN34639.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denit
13_1_40cm_4_scaffold_18276_14
Burkholderiaceae bacterium 26, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8514..8753
DNA (240bp) protein (80aa)
Redox protein, regulator of disulfide bond formation n=12 Tax=Ralstonia RepID=F6G3L7_RALS8
Response regulator SirA {ECO:0000313|EMBL:KJJ99383.1}; TaxID=1619951 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 26.;
putative regulator, SirA-like domain
13_1_40cm_4_scaffold_18276_15
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8840..9238
DNA (399bp) protein (133aa)
Thioredoxin n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RHL5_9RHOO
thioredoxin Tax=RBG_16_Gammaproteobacteria_62_13__curated
Thioredoxin
13_1_40cm_4_scaffold_18276_16
unknown

Not on your lists

comp(9324..10814)
DNA (1491bp) protein (497aa)

This feature has no annotations

13_1_40cm_4_scaffold_18276_17
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(10811..11107)
DNA (297bp) protein (99aa)
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK id=14431068 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK Tax=CSP1_5_NC10
dnaJ; chaperone protein DnaJ
13_1_40cm_4_scaffold_18276_18
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11318..11695)
DNA (378bp) protein (126aa)
50S ribosomal protein L19 n=1 Tax=Methyloversatilis universalis RepID=UPI0003631E0B
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methylov
ribosomal protein L19
13_1_40cm_4_scaffold_18276_19
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11781..12617)
DNA (837bp) protein (279aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
trmD; tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31) Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037A7E10
13_1_40cm_4_scaffold_18276_20
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12622..13119)
DNA (498bp) protein (166aa)
Ribosome maturation factor RimM n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q947_ACIAP
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
16S rRNA processing protein RimM
13_1_40cm_4_scaffold_18276_21
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13157..13435)
DNA (279bp) protein (93aa)
ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RBG_16_Betaproteobacteria_56_24_curated
30S ribosomal protein S16 id=2142168 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
rpsP; 30S ribosomal protein S16
13_1_40cm_4_scaffold_18276_22
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13530..14249)
DNA (720bp) protein (240aa)
Signal recognition particle protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AN70_9PROT
signal recognition particle protein; K03106 signal recognition particle subunit SRP54 Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
signal recognition particle protein
Displaying 22 items

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