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13_1_40cm_4_scaffold_1554

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Displaying items 1-30 of 47 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1554_1
unknown

Not on your lists

comp(3..77)
DNA (75bp) protein (25aa)

This feature has no annotations

13_1_40cm_4_scaffold_1554_trna_1
unknown

Not on your lists

comp(483..555)
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_1554_2
RLO_PLX_64_10, Bacteria

Not on your lists

comp(606..3950)
DNA (3345bp) protein (1115aa)
guanylate cyclase Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Adenylyl cyclase class-3/4/guanylyl cyclase:Tetratricopeptide TPR_4 id=4895065 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1554_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4012..5337)
DNA (1326bp) protein (442aa)
adenylosuccinate synthase; K01939 adenylosuccinate synthase [EC:6.3.4.4] Tax=GWA2_Rokubacteria_73_35_curated
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase id=3779771 bin=GWA2_Methylomirabilis_73_35 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1554_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5330..6643)
DNA (1314bp) protein (438aa)
hisZ; ATP phosphoribosyltransferase regulatory subunit Tax=GWA2_Rokubacteria_73_35_curated
hisZ; ATP phosphoribosyltransferase regulatory subunit id=14625485 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hisZ; ATP phosphoribosyltransferase regulatory subunit
13_1_40cm_4_scaffold_1554_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6640..7266)
DNA (627bp) protein (209aa)
Phosphoglycerate mutase id=3779774 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphoglycerate mutase Tax=GWA2_Rokubacteria_73_35_curated
phosphoglycerate mutase
13_1_40cm_4_scaffold_1554_6
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

7364..7810
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Moorea producens 3L RepID=F4XQB4_9CYAN
Putative uncharacterized protein {ECO:0000313|EMBL:EGJ33216.1}; TaxID=489825 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
hypothetical protein
13_1_40cm_4_scaffold_1554_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8013..9155)
DNA (1143bp) protein (381aa)
sga; Serine-glyoxylate aminotransferase (EC:2.6.1.45) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
sga; Serine-glyoxylate aminotransferase (EC:2.6.1.45)
Serine-glyoxylate aminotransferase id=3779775 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1554_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9192..10703)
DNA (1512bp) protein (504aa)
SagB-type dehydrogenase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625490 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1554_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10715..11695)
DNA (981bp) protein (327aa)
methylthioribose-1-phosphate isomerase (EC:5.3.1.23); K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methylthioribose-1-phosphate isomerase id=3779777 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methylthioribose-1-phosphate isomerase
13_1_40cm_4_scaffold_1554_10
unknown

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comp(11706..12035)
DNA (330bp) protein (110aa)

This feature has no annotations

13_1_40cm_4_scaffold_1554_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12035..12301)
DNA (267bp) protein (89aa)
hypothetical protein; K09131 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4599709 bin=GWC2_Methylomirabilis_70_16 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1554_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12312..12791)
DNA (480bp) protein (160aa)
hypothetical protein; K04074 cell division initiation protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DivIVA domain protein id=4599708 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
cell division protein DivIVA
13_1_40cm_4_scaffold_1554_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12809..13108)
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PLX0_9ZZZZ
hypothetical protein; K02221 YggT family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_1554_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13108..13932)
DNA (825bp) protein (275aa)
proC; pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
proC; pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2] id=14625495 bin=bin7_NC10_sister species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=bin7_NC10_sister organism_group=NC10
proC; pyrroline-5-carboxylate reductase (EC:1.5.1.2)
13_1_40cm_4_scaffold_1554_15
unknown

Not on your lists

comp(13929..14063)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_4_scaffold_1554_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14060..14749)
DNA (690bp) protein (230aa)
hypothetical protein; K06997 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein; K06997 id=14625496 bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alanine racemase domain-containing protein
13_1_40cm_4_scaffold_1554_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14772..15518)
DNA (747bp) protein (249aa)
Putative uncharacterized protein id=4191401 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K05810 conserved hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_1554_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15707..16861)
DNA (1155bp) protein (385aa)
Cell division protein FtsZ id=4191402 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ftsZ; cell division protein ftsZ Tax=GWA2_Rokubacteria_73_35_curated
ftsZ; cell division protein ftsZ
13_1_40cm_4_scaffold_1554_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(17055..18278)
DNA (1224bp) protein (408aa)
cell division protein FtsA; K03590 cell division protein FtsA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cell division protein ftsA id=4191403 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ftsA; cell division protein FtsA
13_1_40cm_4_scaffold_1554_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18305..19177)
DNA (873bp) protein (291aa)
polypeptide-transport-associated domain-containing protein; K03589 cell division protein FtsQ Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Polypeptide-transport-associated domain protein FtsQ-type id=4191404 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
polypeptide-transport-associated domain-containing protein
13_1_40cm_4_scaffold_1554_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19170..20048)
DNA (879bp) protein (293aa)
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UDP-N-acetylenolpyruvoylglucosamine reductase id=4191405 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
murB; UDP-N-acetylenolpyruvoylglucosamine reductase
13_1_40cm_4_scaffold_1554_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20042..21316)
DNA (1275bp) protein (425aa)
murC; UDP-N-acetylmuramate--L-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
murC; UDP-N-acetylmuramate--L-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] id=14625504 bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
murC; UDP-N-acetylmuramate--L-alanine ligase
13_1_40cm_4_scaffold_1554_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(21386..22483)
DNA (1098bp) protein (366aa)
stage V sporulation protein E; K03588 cell division protein FtsW Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
stage V sporulation protein E; K03588 cell division protein FtsW id=14625505 bin=bin7_NC10_sister species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
stage V sporulation protein E
13_1_40cm_4_scaffold_1554_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22787..23170)
DNA (384bp) protein (128aa)
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UDP-N-acetylmuramoylalanine--D-glutamate ligase id=3503975 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UDP-N-acetylmuramoylalanine--D-glutamate ligase
13_1_40cm_4_scaffold_1554_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24253..25335)
DNA (1083bp) protein (361aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13); K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Phospho-N-acetylmuramoyl-pentapeptide-transferase id=3503978 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase
13_1_40cm_4_scaffold_1554_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25345..26739)
DNA (1395bp) protein (465aa)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] Tax=RIFCSPLOWO2_12_FULL_Rokubacteri
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase id=3503981 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
13_1_40cm_4_scaffold_1554_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26748..28241)
DNA (1494bp) protein (498aa)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13); K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=RIFCSPLOWO2_02_FULL_Rok
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramyl-tripeptide synthetase id=3503986 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1554_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(28350..30137)
DNA (1788bp) protein (596aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ftsI; peptidoglycan glycosyltransferase (EC:2.4.1.129)
Peptidoglycan synthetase FtsI id=3884431 bin=GWF2_Methylomirabilis_70_14 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1554_29
unknown

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30386..30622
DNA (237bp) protein (79aa)

This feature has no annotations

Displaying items 1-30 of 47 in total

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