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13_1_40cm_4_scaffold_2275

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Displaying items 1-30 of 44 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2275_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1..561)
DNA (561bp) protein (187aa)
Putative uncharacterized protein id=4527469 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_2275_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(563..1549)
DNA (987bp) protein (329aa)
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
Putative uncharacterized protein id=4918811 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_2275_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1555..2472)
DNA (918bp) protein (306aa)
MoxR-like ATPase (EC:3.6.3.-); K03924 MoxR-like ATPase [EC:3.6.3.-] Tax=GWC2_Rokubacteria_70_16_curated
MoxR-like ATPase (EC:3.6.3.-)
MoxR-like ATPase id=4527462 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2275_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2537..2842)
DNA (306bp) protein (102aa)
cupin n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F9322E
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cupin 2 conserved barrel domain protein
13_1_40cm_4_scaffold_2275_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3109..3465)
DNA (357bp) protein (119aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_2275_6
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(3462..3866)
DNA (405bp) protein (135aa)
hypothetical protein; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein; K02050 NitT/TauT family transport system permease protein id=14625185 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_2275_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4213..4632
DNA (420bp) protein (140aa)
two-component system sensor protein (EC:2.7.3.-) Tax=GWA2_Rokubacteria_73_35_curated
cetoacetate metabolism regulatory protein atoC id=2772883 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response receiver-modulated cyclic diguanylate phosphodiesterase
13_1_40cm_4_scaffold_2275_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4786..5670
DNA (885bp) protein (295aa)
Putative uncharacterized protein id=3315427 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2275_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5719..6348
DNA (630bp) protein (210aa)
guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase id=3315421 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2275_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6348..6560
DNA (213bp) protein (71aa)
DNA-directed RNA polymerase subunit omega id=3315419 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-directed RNA polymerase subunit omega Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA-directed RNA polymerase subunit omega
13_1_40cm_4_scaffold_2275_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6560..7789
DNA (1230bp) protein (410aa)
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] Tax=RIFCS
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5)
Coenzyme A biosynthesis bifunctional protein CoaBC id=3315417 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2275_12
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

7804..9525
DNA (1722bp) protein (574aa)
Phage SPO1 DNA polymerase-related protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SMZ1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:BAL59003.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
hypothetical protein
13_1_40cm_4_scaffold_2275_13
unknown

Not on your lists

comp(9866..10342)
DNA (477bp) protein (159aa)

This feature has no annotations

13_1_40cm_4_scaffold_2275_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10646..11323
DNA (678bp) protein (226aa)
priA; primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Primosomal protein N id=5019508 bin=GWA2_Methylomirabilis_73_35 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
primosomal protein N'
13_1_40cm_4_scaffold_2275_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11311..11835
DNA (525bp) protein (175aa)
formylmethionine deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptide deformylase id=14625194 bin=bin7_NC10_sister species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
peptide deformylase
13_1_40cm_4_scaffold_2275_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11869..12810
DNA (942bp) protein (314aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=GWA2_Rokubacteria_70_23_curated
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase id=5019509 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2275_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12807..14180
DNA (1374bp) protein (458aa)
hypothetical protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4505282 bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2275_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14177..14812
DNA (636bp) protein (212aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=GWA2_Rokubacteria_73_35_curated
HAD-superfamily hydrolase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] id=14625197 bin=bin7_NC10_sister species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
13_1_40cm_4_scaffold_2275_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


14852..16198
DNA (1347bp) protein (449aa)
signal recognition particle subunit FFH/SRP54 (srp54); K03106 signal recognition particle subunit SRP54 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Signal recognition particle protein id=3772763 bin=GWC2_Methylomirabilis_70_16 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
signal recognition particle subunit FFH/SRP54 (srp54)
13_1_40cm_4_scaffold_2275_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


16203..16448
DNA (246bp) protein (82aa)
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S16 id=4505275 bin=GWF2_Methylomirabilis_70_14 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S16
13_1_40cm_4_scaffold_2275_21
RBG_19FT_COMBO_Deltaproteobacteria_46_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16508..16738
DNA (231bp) protein (77aa)
UPF0109 protein NITGR_380022 n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZC03_9BACT
hypothetical protein; K06960 Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_9_curated
hypothetical protein
13_1_40cm_4_scaffold_2275_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

16749..17252
DNA (504bp) protein (168aa)
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
16S rRNA-processing protein RimM id=5019513 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
16S rRNA processing protein RimM
13_1_40cm_4_scaffold_2275_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17263..17901
DNA (639bp) protein (213aa)
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=GWA2_Rokubacteria_73_35_curated
tRNA (Guanine-N1)-methyltransferase id=4734641 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA (Guanine37-N(1)-) methyltransferase
13_1_40cm_4_scaffold_2275_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


17988..18362
DNA (375bp) protein (125aa)
50S ribosomal protein L19 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L19 id=3772772 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplS; 50S ribosomal protein L19
13_1_40cm_4_scaffold_2275_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18381..19025
DNA (645bp) protein (215aa)
rnhB; ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII id=4734640 bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2275_26
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

19434..20774
DNA (1341bp) protein (447aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=3102610 bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fis family transcriptional regulator; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=GWC2_Rokubacteria_70_16_curated
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
13_1_40cm_4_scaffold_2275_27
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

21044..22078
DNA (1035bp) protein (345aa)
Uncharacterized protein id=1821595 bin=GWD2_Nitrospirae-related_57_8 species=Glaciecola psychrophila genus=Glaciecola taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein Tax=GWC2_Nitrospirae_57_13_curated
13_1_40cm_4_scaffold_2275_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

22237..22644
DNA (408bp) protein (136aa)
UPF0102 protein STH1475 id=4734627 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K07460 putative endonuclease Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2275_29
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

22677..23579
DNA (903bp) protein (301aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C9F9_SPHTD
phenazine biosynthesis protein PhzF family
Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:ACZ40452.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sph
13_1_40cm_4_scaffold_2275_30
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

23614..24660
DNA (1047bp) protein (349aa)
O-acetylserine (thiol)-lyase; K01738 cysteine synthase A [EC:2.5.1.47] Tax=RBG_16_Zixibacteria_53_22_curated
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A id=4734592 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Caldiarchaeum subterraneum genus=Candidatus Caldiarchaeum taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 44 in total

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