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13_1_40cm_4_scaffold_2758

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2758_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

523..1470
DNA (948bp) protein (316aa)
GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] id=14625745 bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
GMP synthase (EC:6.3.5.2)
13_1_40cm_4_scaffold_2758_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1482..4955
DNA (3474bp) protein (1158aa)
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit id=4891633 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2758_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4939..5898
DNA (960bp) protein (320aa)
acetyl-CoA carboxylase, carboxyl transferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curate
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha id=4208299 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acetyl-CoA carboxylase subunit alpha
13_1_40cm_4_scaffold_2758_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6046..6996)
DNA (951bp) protein (317aa)
Putative sugar-binding domain protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V5Z7_9FIRM
transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DeoR transcriptional regulator
13_1_40cm_4_scaffold_2758_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7141..8655
DNA (1515bp) protein (505aa)
hypothetical protein; K01622 fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
fbp; bifunctional fructose-1,6-bisphosphatase (EC:3.1.3.11) id=14628042 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_2758_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8779..10101
DNA (1323bp) protein (441aa)
tRNA-i(6)A37 thiotransferase enzyme MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB id=3887630 bin=GWC2_Methylomirabilis_70_24 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
13_1_40cm_4_scaffold_2758_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10086..10592
DNA (507bp) protein (169aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB id=4745854 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2758_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10955..11740
DNA (786bp) protein (262aa)
Glycosyl transferase group 1 id=4745855 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase Tax=GWA2_Rokubacteria_73_35_curated
group 1 glycosyl transferase
13_1_40cm_4_scaffold_2758_9
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11903..12271
DNA (369bp) protein (123aa)
Uncharacterized protein {ECO:0000313|EMBL:KFE64394.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyal
13_1_40cm_4_scaffold_2758_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

12268..13575
DNA (1308bp) protein (436aa)
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] id=14628064 bin=bin7_NC10_sister species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=CSP1_6_Rokubacteria
phenylacetate--CoA ligase (EC:6.2.1.30)
13_1_40cm_4_scaffold_2758_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13572..14393
DNA (822bp) protein (274aa)
putative phenylacetic acid degradation protein; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative phenylacetic acid degradation protein id=4527241 bin=GWF2_Methylomirabilis_70_14 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative phenylacetic acid degradation protein
13_1_40cm_4_scaffold_2758_12
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

14398..14535
DNA (138bp) protein (46aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=4327970 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiol-specific antioxidant protein
13_1_40cm_4_scaffold_2758_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

14680..14889
DNA (210bp) protein (70aa)
Thiol-specific antioxidant protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Thiol-specific antioxidant protein id=4327972 bin=GWA2_Methylomirabilis_73_35 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2758_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14932..15555)
DNA (624bp) protein (208aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4745859 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2758_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

15937..16137
DNA (201bp) protein (67aa)
Uncharacterized protein conserved in bacteria id=3301632 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K09942 hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_2758_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16501..16731)
DNA (231bp) protein (77aa)
dioxygenase, ferredoxin subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dioxygenase, ferredoxin subunit id=4745862 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dioxygenase, ferredoxin subunit
13_1_40cm_4_scaffold_2758_17
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

16832..18202
DNA (1371bp) protein (457aa)
Beta-lactamase domain protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C608_SPHTD
beta-lactamase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
beta-lactamase domain-containing protein
13_1_40cm_4_scaffold_2758_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18227..20050)
DNA (1824bp) protein (608aa)
tapB; type IV pilus assembly protein tapB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV-A pilus assembly ATPase PilB id=4686859 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
pilB; type IV pilus biogenesis ATPase PilB
13_1_40cm_4_scaffold_2758_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

20349..20996
DNA (648bp) protein (216aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
signAl transduction histidine kinase containing a receiver domain id=14627170 bin=bin7_NC10_sister species=Thermus scotoductus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
Zinc finger-domain-containing protein
13_1_40cm_4_scaffold_2758_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21123..21836
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003781CD2
hypothetical protein; K07020 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_2758_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

21898..22173
DNA (276bp) protein (92aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_4_scaffold_2758_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(22766..23137)
DNA (372bp) protein (124aa)
Proline-rich region n=1 Tax=Azoarcus sp. KH32C RepID=H0Q0N5_9RHOO
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
proline-rich region
13_1_40cm_4_scaffold_2758_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23253..23720)
DNA (468bp) protein (156aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627300 bin=bin7_NC10_sister species=Acetobacter tropicalis genus=Acetobacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_2758_24
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(24408..24680)
DNA (273bp) protein (91aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAA
hypothetical protein n=1 Tax=Geitlerinema sp. PCC 7105 RepID=UPI00034670B3
methylglyoxal synthase
13_1_40cm_4_scaffold_2758_25
unknown

Not on your lists

comp(24959..25312)
DNA (354bp) protein (118aa)

This feature has no annotations

13_1_40cm_4_scaffold_2758_26
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(25330..25935)
DNA (606bp) protein (202aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=4221598 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2758_27
CSP1_5_NC10, NC10, Bacteria

Not on your lists

26393..27187
DNA (795bp) protein (265aa)
sulfite oxidase (EC:1.8.3.1) Tax=CSP1_5_NC10
sulfite oxidase (EC:1.8.3.1) id=14429311 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
sulfite oxidase (EC:1.8.3.1)
13_1_40cm_4_scaffold_2758_28
Natrinema altunense, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(27184..27657)
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:ELY89712.1}; TaxID=1227494 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema altunense JCM 12890.;"
13_1_40cm_4_scaffold_2758_29
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27933..28472
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI0003733CEE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW95299.1}; TaxID=1003195 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC
13_1_40cm_4_scaffold_2758_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

28496..28966
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q1I2_STANL
conserved hypothetical protein, DUF2587 superfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
Displaying items 1-30 of 34 in total

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