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13_1_40cm_4_scaffold_5310

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5310_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

241..840
DNA (600bp) protein (200aa)
Thioesterase domain-containing protein id=4964311 bin=GWA2_Methylomirabilis_73_35 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioesterase domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
thioesterase domain-containing protein
13_1_40cm_4_scaffold_5310_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1000..1305
DNA (306bp) protein (102aa)
RNP-1 like RNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNP-1 like RNA-binding protein id=4283016 bin=GWC2_Methylomirabilis_70_16 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RNP-1 like RNA-binding protein
13_1_40cm_4_scaffold_5310_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1696..1863
DNA (168bp) protein (56aa)
id=4527437 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_5310_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1865..2083)
DNA (219bp) protein (73aa)
Zinc finger, CDGSH-type id=14625183 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
Zinc finger, CDGSH-type Tax=CSP1_6_Rokubacteria
Zinc finger, CDGSH-type
13_1_40cm_4_scaffold_5310_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2159..3520
DNA (1362bp) protein (454aa)
Radical SAM domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Radical SAM domain protein id=4817720 bin=GWC2_Methylomirabilis_70_24 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
radical SAM domain protein
13_1_40cm_4_scaffold_5310_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3795..4265
DNA (471bp) protein (157aa)
nitrogen-fixing NifU domain-containing protein; K07400 Fe/S biogenesis protein NfuA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Nitrogen fixation protein NifU id=4817719 bin=GWC2_Methylomirabilis_70_24 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nitrogen-fixing NifU domain-containing protein
13_1_40cm_4_scaffold_5310_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4370..5350
DNA (981bp) protein (327aa)
biotin carboxylase-like Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
biotin carboxylase-like id=14626151 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
biotin carboxylase-like
13_1_40cm_4_scaffold_5310_8
CSP1_5_NC10, NC10, Bacteria

Not on your lists

5500..6102
DNA (603bp) protein (201aa)
hypothetical protein id=14430789 bin=bin3_NC10 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
hypothetical protein
13_1_40cm_4_scaffold_5310_9
unknown

Not on your lists

comp(6163..6300)
DNA (138bp) protein (46aa)

This feature has no annotations

13_1_40cm_4_scaffold_5310_10
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

6441..7715
DNA (1275bp) protein (425aa)
braC; Leu/Ile/Val-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Probable Leu/Ile/Val-binding protein id=3013101 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Pelagibacter ubique genus=Candidatus Pelagibacter taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
twin-arginine translocation pathway signal
13_1_40cm_4_scaffold_5310_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7816..8583
DNA (768bp) protein (256aa)
Inner-membrane translocator id=3013107 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
inner-membrane translocator
13_1_40cm_4_scaffold_5310_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8550..9524
DNA (975bp) protein (325aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
Inner-membrane translocator id=3013111 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
13_1_40cm_4_scaffold_5310_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9521..10246
DNA (726bp) protein (242aa)
LivG-like protein id=3013115 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Pelagibacter ubique genus=Candidatus Pelagibacter taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LivG-like protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
LivG-like protein
13_1_40cm_4_scaffold_5310_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10243..10950
DNA (708bp) protein (236aa)
Probable high-affinity branched-chain amino acid transport ATP-binding protein id=3013121 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Pelagibacter ubique genus=Candidatus Pelagibacter taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
braG; high-affinity branched-chain amino acid transport ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
branched-chain amino acid ABC transporter ATPase
13_1_40cm_4_scaffold_5310_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11030..13003
DNA (1974bp) protein (658aa)
dehydrogenase, E1 component; K11381 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] Tax=GWA2_Rokubacteria_73_35_curated
Dehydrogenase E1 component id=3013129 bin=GWA2_Methylomirabilis_73_35 species=Mesorhizobium metallidurans genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dehydrogenase, E1 component
13_1_40cm_4_scaffold_5310_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13057..13818)
DNA (762bp) protein (254aa)
hypothetical protein id=4034163 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_5310_17
unknown

Not on your lists

14578..16224
DNA (1647bp) protein (549aa)

This feature has no annotations

13_1_40cm_4_scaffold_5310_18
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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16493..16783
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIC3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67273.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_1_40cm_4_scaffold_5310_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16831..17280
DNA (450bp) protein (150aa)
2,3-dihydroxybenzoate-AMP ligase id=3779769 bin=GWA2_Methylomirabilis_73_35 species=Alcanivorax dieselolei genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
entE; 2,3-dihydroxybenzoate-AMP ligase Tax=GWA2_Rokubacteria_73_35_curated
(2,3-dihydroxybenzoyl)adenylate synthase
13_1_40cm_4_scaffold_5310_20
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17277..18446
DNA (1170bp) protein (390aa)
AMP-dependent synthetase and ligase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FAS2_CONWI
AMP-dependent synthetase and ligase Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
AMP-dependent synthetase and ligase
13_1_40cm_4_scaffold_5310_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

18499..18672
DNA (174bp) protein (58aa)
sulfur carrier protein ThiS Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
UBA/THIF-type NAD/FAD binding protein id=14626398 bin=bin7_NC10_sister species=Actinopolymorpha alba genus=Actinopolymorpha taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_5310_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

18684..18995
DNA (312bp) protein (104aa)
phenylacetic acid degradation protein paaA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
phenylacetic acid degradation protein paaA id=14627178 bin=bin7_NC10_sister species=Frankia alni genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_5310_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

18992..19822
DNA (831bp) protein (277aa)
phenylacetic acid degradation protein paaA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
phenylacetic acid degradation protein paaA id=14627178 bin=bin7_NC10_sister species=Frankia alni genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
phenylacetic acid degradation protein paaA
13_1_40cm_4_scaffold_5310_24
unknown

Not on your lists

19934..20092
DNA (159bp) protein (53aa)

This feature has no annotations

Displaying 24 items

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