ggKbase home page

13_1_40cm_4_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4_1
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

2..895
DNA (894bp) protein (298aa)
argininosuccinate lyase id=14427511 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
argininosuccinate lyase Tax=CSP1_1_Thaumarchaeota
argininosuccinate lyase
13_1_40cm_4_scaffold_4_2
unknown

Not on your lists

1075..1557
DNA (483bp) protein (161aa)

This feature has no annotations

13_1_40cm_4_scaffold_4_trna_2
unknown

Not on your lists

comp(2073..2146)
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_4_3
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(2394..3197)
DNA (804bp) protein (268aa)
Inositol-phosphate phosphatase n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUT0_9ARCH
Inositol-phosphate phosphatase
Inositol-phosphate phosphatase {ECO:0000313|EMBL:AJW71656.1}; TaxID=1580092 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus s
13_1_40cm_4_scaffold_4_4

Not on your lists

3283..3756
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AU54_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:AIF12473.1}; TaxID=1456200 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_55_H11.;"
hypothetical protein
13_1_40cm_4_scaffold_4_5
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

3782..4405
DNA (624bp) protein (208aa)
hypothetical protein id=14427509 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein Tax=CSP1_1_Thaumarchaeota
hypothetical protein
13_1_40cm_4_scaffold_4_6
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

4412..5572
DNA (1161bp) protein (387aa)
ATPase central domain-containing protein id=14427508 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ATPase central domain-containing protein Tax=CSP1_1_Thaumarchaeota
ATPase, AAA family
13_1_40cm_4_scaffold_4_7
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

5569..5883
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0B7D7_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFS82063.1}; TaxID=1229909 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.
13_1_40cm_4_scaffold_4_8
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

6437..6709
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUS5_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI06277.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
13_1_40cm_4_scaffold_4_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

6746..7267
DNA (522bp) protein (174aa)
carboxyl transferase id=14427502 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
carboxyl transferase Tax=CSP1_1_Thaumarchaeota
carboxyl transferase
13_1_40cm_4_scaffold_4_10
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

7240..8319
DNA (1080bp) protein (360aa)
carboxyl transferase Tax=CSP1_1_Thaumarchaeota
carboxyl transferase id=14427502 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
carboxyl transferase domain protein
13_1_40cm_4_scaffold_4_11
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

8326..9819
DNA (1494bp) protein (498aa)
carbamoyl-phosphate synthase L chain ATP-binding protein id=14427501 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
carbamoyl-phosphate synthase L chain ATP-binding protein Tax=CSP1_1_Thaumarchaeota
carbamoyl-phosphate synthase L chain ATP-binding protein
13_1_40cm_4_scaffold_4_12

Not on your lists

9821..10333
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI0003631778
Biotin/lipoyl attachment domain-containing protein {ECO:0000313|EMBL:AIF13911.1}; TaxID=1456223 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_
biotin/lipoyl attachment domain-containing protein
13_1_40cm_4_scaffold_4_13
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(10376..10840)
DNA (465bp) protein (155aa)
peroxiredoxin id=14427499 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
peroxiredoxin Tax=CSP1_1_Thaumarchaeota
peroxiredoxin
13_1_40cm_4_scaffold_4_14
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

10979..11395
DNA (417bp) protein (139aa)
NADH-ubiquinone oxidoreductase subunit A; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3] id=14427498 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 {ECO:0000313|EMBL:EPA04856.1}; TaxID=859192 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" s
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
13_1_40cm_4_scaffold_4_15
Candidatus Nitrosopelagicus brevis, Candidatus Nitrosopelagicus, Thaumarchaeota, Archaea

Not on your lists

11439..11966
DNA (528bp) protein (176aa)
NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D0G5_9ARCH
NADH-quinone oxidoreductase, B subunit
NADH-quinone oxidoreductase, B subunit {ECO:0000313|EMBL:AJA92337.1}; TaxID=1410606 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Candidatus Nitrosopelagicus brevis.;"
13_1_40cm_4_scaffold_4_16
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

11969..12640
DNA (672bp) protein (224aa)
NADH-ubiquinone oxidoreductase, subunit C {ECO:0000313|EMBL:CDI06270.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CDI06270.1};; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" sourc
NADH-ubiquinone oxidoreductase subunit C (EC:1.6.5.3)
NADH-ubiquinone oxidoreductase, subunit C n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUS2_9ARCH
13_1_40cm_4_scaffold_4_17
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

12642..13775
DNA (1134bp) protein (378aa)
NADH-quinone oxidoreductase subunit D {ECO:0000313|EMBL:CDI06269.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CDI06269.1};; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="
NADH-ubiquinone oxidoreductase subunit D (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit D n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUP4_9ARCH
13_1_40cm_4_scaffold_4_18
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

13776..15077
DNA (1302bp) protein (434aa)
NADH dehydrogenase (Quinone) n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CU06_9ARCH
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:EGP93009.1}; TaxID=1001994 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitros
NADH dehydrogenase
13_1_40cm_4_scaffold_4_19
Cenarchaeum symbiosum, Cenarchaeum, Cenarchaeales, Thaumarchaeota, Archaea

Not on your lists

15074..15571
DNA (498bp) protein (166aa)
NADH-ubiquinone oxidoreductase subunit I (EC:1.6.5.3)
NADH-ubiquinone oxidoreductase, subunit I {ECO:0000313|EMBL:ABK78287.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABK78287.1};; TaxID=414004 species="Archaea; Thaumarchaeota; Cenarchaeales; Cenarchaeaceae; Cenarc
NADH-ubiquinone oxidoreductase, subunit I n=1 Tax=Cenarchaeum symbiosum (strain A) RepID=A0RY70_CENSY
13_1_40cm_4_scaffold_4_20
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

15564..16076
DNA (513bp) protein (171aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AU45_9ARCH
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 {ECO:0000313|EMBL:CDI06266.1}; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
13_1_40cm_4_scaffold_4_21
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

16057..16362
DNA (306bp) protein (102aa)
NADH dehydrogenase subunit K {ECO:0000313|EMBL:EPA05552.1}; EC=1.6.99.5 {ECO:0000313|EMBL:EPA05552.1};; TaxID=859192 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus N
ndhE; NAD(P)H-quinone oxidoreductase subunit 4L (EC:1.6.5.-)
NADH dehydrogenase subunit K n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EM07_9ARCH
13_1_40cm_4_scaffold_4_22
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

16362..17915
DNA (1554bp) protein (518aa)
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2E2Q7_9ARCH
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:EPA05555.1}; TaxID=859192 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.
proton-translocating NADH-quinone oxidoreductase subunit M
13_1_40cm_4_scaffold_4_23
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

17919..20003
DNA (2085bp) protein (695aa)
Proton-translocating NADH-quinone oxidoreductase, chain L {ECO:0000313|EMBL:CDI06263.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CDI06263.1};; TaxID=1407055 species="Archaea; Thaumarchaeota; unclassified Thauma
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUX1_9ARCH
Proton-translocating NADH-quinone oxidoreductase subunit L
13_1_40cm_4_scaffold_4_24
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

20014..21501
DNA (1488bp) protein (496aa)
proton-translocating NADH-quinone oxidoreductase subunit N id=14427487 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
proton-translocating NADH-quinone oxidoreductase subunit N Tax=CSP1_1_Thaumarchaeota
proton-translocating NADH-quinone oxidoreductase, chain N
13_1_40cm_4_scaffold_4_25
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(21491..22342)
DNA (852bp) protein (284aa)
polyprenyl synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] id=14427486 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
polyprenyl synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] Tax=CSP1_1_Thaumarchaeota
polyprenyl synthetase
13_1_40cm_4_scaffold_4_26
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

22570..23208
DNA (639bp) protein (213aa)
TENA/THI-4 domain-containing protein; K06137 pyrroloquinoline-quinone synthase [EC:1.3.3.11] id=14427485 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
TENA/THI-4 domain-containing protein; K06137 pyrroloquinoline-quinone synthase [EC:1.3.3.11] Tax=CSP1_1_Thaumarchaeota
TENA/THI-4 domain protein
13_1_40cm_4_scaffold_4_trna_1
unknown

Not on your lists

23251..23324
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_4_27
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

23647..24210
DNA (564bp) protein (188aa)
2-alkenal reductase (EC:1.3.1.74)
TATA-box-binding protein n=2 Tax=Nitrosopumilaceae RepID=A9A365_NITMS
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
13_1_40cm_4_scaffold_4_28

Not on your lists

comp(24231..24839)
DNA (609bp) protein (203aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rul
pyrE; Orotate phosphoribosyltransferase (EC:2.4.2.10)
orotate phosphoribosyltransferase id=14427484 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Displaying items 1-30 of 55 in total

View Taxonomy