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13_1_40cm_4_scaffold_2418

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2418_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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239..679
DNA (441bp) protein (147aa)
Nodulation efficiency protein D n=2 Tax=Turicibacter RepID=D4W327_9FIRM id=5223561 bin=16ft_combo_ws3_JS1 species=unknown genus=Turicibacter taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Nodulation efficiency protein D Tax=RBG_16_RIF_WS3X_71_46_curated
13_1_40cm_4_scaffold_2418_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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686..1615
DNA (930bp) protein (310aa)
Band 7 protein n=1 Tax=sediment metagenome RepID=D9PI62_9ZZZZ id=5223562 bin=16ft_combo_ws3_JS1 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative membrane protease subunit HflC Tax=RBG_16_RIF_WS3X_71_46_curated
membrane protease subunit, stomatin/prohibitin
13_1_40cm_4_scaffold_2418_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

1671..2459
DNA (789bp) protein (263aa)
phosphoribosylformylglycinamidine synthase I; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
purQ; phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 1 n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F265_ACIC5
13_1_40cm_4_scaffold_2418_4
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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2544..5039
DNA (2496bp) protein (832aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formyl
Phosphoribosylformylglycinamidine synthase 2 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHM8_KORVE
phosphoribosylformylglycinamidine synthase II
13_1_40cm_4_scaffold_2418_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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5456..6964
DNA (1509bp) protein (503aa)
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256
amidophosphoribosyltransferase n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037703AB
13_1_40cm_4_scaffold_2418_6
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6990..7640
DNA (651bp) protein (217aa)
signal peptidase I; K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
signal peptidase I (EC:3.4.21.89)
Signal peptidase I. Serine peptidase. MEROPS family S26A id=4430819 bin=GWA2_Deltaproteo_65_63 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
13_1_40cm_4_scaffold_2418_7
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

7884..8945
DNA (1062bp) protein (354aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synth
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM88_KORVE
phosphoribosylformylglycinamidine cyclo-ligase
13_1_40cm_4_scaffold_2418_8
unknown

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comp(8997..9131)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_4_scaffold_2418_9
RLO_RIF02_62_27, RIF2, Bacteria

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9142..9366
DNA (225bp) protein (75aa)
Tyrosine recombinase XerC n=1 Tax=Pseudomonas sp. M47T1 RepID=I4MV76_9PSED
xerC; site-specific tyrosine recombinase XerC Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
putative phage integrase
Displaying 9 items

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