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13_1_40cm_4_scaffold_2891

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Displaying items 1-30 of 32 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2891_1
unknown

Not on your lists

comp(229..405)
DNA (177bp) protein (59aa)

This feature has no annotations

13_1_40cm_4_scaffold_2891_2
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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507..1559
DNA (1053bp) protein (351aa)
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|H
Valine--tRNA ligase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LZL5_CLOCD
Suspect SCG annotation. See neighboring gene [13_1_40cm_4_scaffold_2891_3].
13_1_40cm_4_scaffold_2891_3
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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1591..2814
DNA (1224bp) protein (408aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|H
Valine--tRNA ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVG3_KORVE
valyl-tRNA synthetase
13_1_40cm_4_scaffold_2891_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

2837..3769
DNA (933bp) protein (311aa)
nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC:2.4.2.19) Tax=RBG_16_Nitrospirae_64_22_curated
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZU3_RUBXD
13_1_40cm_4_scaffold_2891_5
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

3803..4807
DNA (1005bp) protein (335aa)
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] Tax=RIFCSPLOWO2_02_FULL_Acidobacteri
Biotin--acetyl-CoA-carboxylase ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVG0_KORVE
biotin--acetyl-CoA-carboxylase ligase
13_1_40cm_4_scaffold_2891_6
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

4808..5650
DNA (843bp) protein (281aa)
pantothenate kinase; K03525 type III pantothenate kinase [EC:2.7.1.33] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
Type III pantothenate kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=COAX_KORVE
pantothenate kinase
13_1_40cm_4_scaffold_2891_7
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

5607..6437
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NWL2_GRAMM
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
hypothetical protein
13_1_40cm_4_scaffold_2891_8
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

6531..7838
DNA (1308bp) protein (436aa)
(Uracil-5)-methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVF7_KORVE
(uracil-5)-methyltransferase
13_1_40cm_4_scaffold_2891_9
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

7835..9490
DNA (1656bp) protein (552aa)
DNA internalization-related competence protein ComEC/Rec2 n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F224_ACIC5
DNA internalization-related competence protein ComEC/Rec2; K02238 competence protein ComEC Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
DNA internalization-related competence protein ComEC/Rec2
13_1_40cm_4_scaffold_2891_10
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

9465..10475
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003757301
DNA internalization-related competence protein ComEC/Rec2; K02238 competence protein ComEC Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
DNA internalization-related competence protein ComEC/Rec2
13_1_40cm_4_scaffold_2891_11
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(10428..10985)
DNA (558bp) protein (186aa)
hypothetical protein id=16847096 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
hypothetical protein Tax=RBG_16_Aminicenantes_63_16_curated
S-isoprenylcysteine methyltransferase-like protein
13_1_40cm_4_scaffold_2891_12
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(10982..11998)
DNA (1017bp) protein (339aa)
ADP-heptose--LPS heptosyltransferase; K02841 heptosyltransferase I [EC:2.4.-.-] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Glycosyl transferase family 9 n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V1D6_TERSS
glycosyl transferase family protein
13_1_40cm_4_scaffold_2891_13
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(11991..12425)
DNA (435bp) protein (145aa)
cytidyltransferase-related domain-containing protein id=12555681 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cytidyltransferase-related domain-containing protein
Cytidyltransferase-related domain protein {ECO:0000313|EMBL:AEP11344.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium
13_1_40cm_4_scaffold_2891_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(12463..13521)
DNA (1059bp) protein (353aa)
ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase {ECO:0000313|EMBL:CDM65985.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Py
PfkB domain protein id=4143312 bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribokinase-like domain-containing protein
13_1_40cm_4_scaffold_2891_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13518..14087)
DNA (570bp) protein (190aa)
Histidinol-phosphate phosphatase family protein {ECO:0000313|EMBL:CDM65986.1}; EC=3.1.3.82 {ECO:0000313|EMBL:CDM65986.1};; EC=3.1.3.83 {ECO:0000313|EMBL:CDM65986.1};; TaxID=454194 species="Bacteria; A
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NC24_DESAR
histidinol-phosphate phosphatase
13_1_40cm_4_scaffold_2891_16
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(14080..15126)
DNA (1047bp) protein (349aa)
lipopolysaccharide heptosyltransferase II; K02843 heptosyltransferase II [EC:2.4.-.-] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Lipopolysaccharide heptosyltransferase II n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SR3_SOLUE
lipopolysaccharide heptosyltransferase II
13_1_40cm_4_scaffold_2891_17
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(15123..16130)
DNA (1008bp) protein (336aa)
lpxK; Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase) (EC:2.7.1.130) Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Tetraacyldisaccharide 4'-kinase n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZZ84_DESOH
tetraacyldisaccharide 4'-kinase
13_1_40cm_4_scaffold_2891_18
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(16127..17500)
DNA (1374bp) protein (458aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Three-deoxy-D-manno-octulosonic-acid transferase-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHD3_KORVE
3-deoxy-D-manno-octulosonic-acid transferase
13_1_40cm_4_scaffold_2891_19
unknown

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17596..17880
DNA (285bp) protein (95aa)

This feature has no annotations

13_1_40cm_4_scaffold_2891_20
unknown

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comp(17921..18160)
DNA (240bp) protein (80aa)

This feature has no annotations

13_1_40cm_4_scaffold_2891_21
unknown

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comp(18620..18928)
DNA (309bp) protein (103aa)

This feature has no annotations

13_1_40cm_4_scaffold_2891_22
unknown

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comp(19535..20104)
DNA (570bp) protein (190aa)

This feature has no annotations

13_1_40cm_4_scaffold_2891_23
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

20771..22306
DNA (1536bp) protein (512aa)
Amino acid permease-associated region n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029V7_SOLUE
amino acid permease
Amino acid permease-associated region {ECO:0000313|EMBL:ABJ82169.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Soli
13_1_40cm_4_scaffold_2891_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

22319..23176
DNA (858bp) protein (286aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein id=14430002 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_2891_25
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

23115..24185
DNA (1071bp) protein (357aa)
adenosine deaminase; K01488 adenosine deaminase [EC:3.5.4.4] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036745EF
adenosine deaminase
13_1_40cm_4_scaffold_2891_26
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

24216..24458
DNA (243bp) protein (81aa)
phosphoribosylformylglycinamidine synthetase PurS; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Phosphoribosylformylglycinamidine synthetase PurS n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISZ9_KORVE
phosphoribosylformylglycinamidine synthase subunit PurS
13_1_40cm_4_scaffold_2891_27
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

24523..26388
DNA (1866bp) protein (622aa)
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
glutamine amidotransferase n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035FE553
13_1_40cm_4_scaffold_2891_28
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

26418..27728
DNA (1311bp) protein (437aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
outer membrane protein; K07277 outer membrane protein id=12554247 bin=CNBR_ACIDO species=Rhodopirellula sallentina genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_4_scaffold_2891_29
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

27753..28679
DNA (927bp) protein (309aa)
ExsB family protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01ZH4_SOLUE
exoenzyme S synthesis protein B; K06864 uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
exoenzyme S synthesis protein B
13_1_40cm_4_scaffold_2891_30
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

28718..29710
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI0003B6EF95
hypothetical protein Tax=RBG_16_Zixibacteria_50_21_curated
hypothetical protein
Displaying items 1-30 of 32 in total

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