ggKbase home page

13_1_40cm_4_scaffold_490

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_490_1
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(166..792)
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILW9_KORVE
hypothetical protein; K07220 hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_40cm_4_scaffold_490_2
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1007..2641)
DNA (1635bp) protein (545aa)
60 kDa chaperonin n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=CH60_KORVE
groEL; chaperonin GroEL; K04077 chaperonin GroEL Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
groEL; molecular chaperone GroEL
13_1_40cm_4_scaffold_490_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(2745..3065)
DNA (321bp) protein (107aa)
10 kDa chaperonin n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LG61_CHLTF
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=454194 speci
Co-chaperonin GroES (HSP10)
13_1_40cm_4_scaffold_490_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

3330..5309
DNA (1980bp) protein (660aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrin
Two-component sensor kinase id=3760154 bin=GWA2_Planctomycetia_40_7 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
PAS/PAC sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_490_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

5345..6712
DNA (1368bp) protein (456aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8A837_THEID
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:CDM64893.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomo
Fis family two component sigma-54 specific transcriptional regulator
13_1_40cm_4_scaffold_490_6
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

6767..7408
DNA (642bp) protein (214aa)
molybdopterin-guanine dinucleotide biosynthesis protein; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
Probable molybdenum cofactor guanylyltransferase n=1 Tax=Geobacillus sp. (strain Y412MC10) RepID=D3EML8_GEOS4
formate dehydrogenase family accessory protein FdhD
13_1_40cm_4_scaffold_490_7
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

7405..8271
DNA (867bp) protein (289aa)
ABC transporter related protein n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8WYU0_ACISM
ABC transporter-like protein; K02065 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
ABC transporter
13_1_40cm_4_scaffold_490_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

8268..9707
DNA (1440bp) protein (480aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035F1A0A
amino acid permease
Amino acid permease-associated region {ECO:0000313|EMBL:ABJ82825.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Soli
13_1_40cm_4_scaffold_490_9
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(9747..10487)
DNA (741bp) protein (247aa)
ial:IALB_2405 ribE; Riboflavin synthase subunit alpha; K00793 riboflavin synthase [EC:2.5.1.9] id=719659 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
riboflavin synthase subunit alpha (EC:2.5.1.9)
13_1_40cm_4_scaffold_490_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10512..11513
DNA (1002bp) protein (334aa)
Zinc-binding alcohol dehydrogenase family protein {ECO:0000313|EMBL:CDM64523.1}; EC=1.1.1.1 {ECO:0000313|EMBL:CDM64523.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4;
zinc-binding alcohol dehydrogenase family protein (EC:1.1.1.1)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000379060A
13_1_40cm_4_scaffold_490_11
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(11686..12795)
DNA (1110bp) protein (370aa)
Riboflavin biosynthesis protein RibD n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILB2_KORVE
5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylami
5-amino-6-(5-phosphoribosylamino)uracil reductase
13_1_40cm_4_scaffold_490_12
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(12823..13794)
DNA (972bp) protein (324aa)
Signal recognition particle receptor FtsY n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YT1_SOLUE
signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibac
13_1_40cm_4_scaffold_490_13
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(13895..15700)
DNA (1806bp) protein (602aa)
Metal dependent phosphohydrolase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILB4_KORVE
metal dependent phosphohydrolase Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
metal dependent phosphohydrolase
13_1_40cm_4_scaffold_490_14
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(15861..16913)
DNA (1053bp) protein (351aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFV8_9BACT
NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
13_1_40cm_4_scaffold_490_15
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16910..17548)
DNA (639bp) protein (213aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=PLSY_PELCD
plsY; hypothetical protein
Glycerol-3-phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000255|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:000025
13_1_40cm_4_scaffold_490_16
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(17555..18118)
DNA (564bp) protein (188aa)
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
2'-5' RNA ligase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02C89_SOLUE
2'-5' RNA ligase
13_1_40cm_4_scaffold_490_17
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(18162..19373)
DNA (1212bp) protein (404aa)
CinA-like protein n=1 Tax=uncultured bacterium 89 RepID=E3T697_9BACT
competence/damage-inducible protein cinA; K03742 competence/damage-inducible protein CinA Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
competence/damage-inducible protein CinA-like protein
13_1_40cm_4_scaffold_490_18
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(19382..20431)
DNA (1050bp) protein (350aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPQ8_KORVE
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
13_1_40cm_4_scaffold_490_19
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(20428..21144)
DNA (717bp) protein (239aa)
Putative phosphatidyl-glycerophosphatase n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X2U7_9BACT
Putative phosphatidyl-glycerophosphatase {ECO:0000313|EMBL:AAP58617.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
phosphatidylglycerophosphatase
13_1_40cm_4_scaffold_490_20
unknown

Not on your lists

comp(21128..21262)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_4_scaffold_490_21

Not on your lists

comp(21460..22932)
DNA (1473bp) protein (491aa)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=uncultured bacterium 89 RepID=E3T6A0_9BACT
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
MiaB-like tRNA modifying protein YliG
13_1_40cm_4_scaffold_490_22
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(23091..25775)
DNA (2685bp) protein (895aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036D2165
serine/threonine protein kinase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
serine/threonine protein kinase
13_1_40cm_4_scaffold_490_23
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(25874..28117)
DNA (2244bp) protein (748aa)
Transglutaminase-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPQ3_KORVE
transglutaminase-like Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
transglutaminase
13_1_40cm_4_scaffold_490_24
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(28176..29726)
DNA (1551bp) protein (517aa)
A/G-specific adenine glycosylase n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CQA9_MYXFH
A/G-specific adenine glycosylase Tax=RBG_16_Acidobacteria_70_10_curated
A/G-specific adenine glycosylase
13_1_40cm_4_scaffold_490_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(29730..31835)
DNA (2106bp) protein (702aa)
Uncharacterized protein n=1 Tax=Saccharopolyspora erythraea (strain NRRL 23338) RepID=A4FA91_SACEN id=5225420 bin=16ft_combo_ws3_JS1 species=Saccharopolyspora erythraea genus=Saccharopolyspora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
glycosyl hydrolase BNR repeat-containing glycosyl hydrolase
13_1_40cm_4_scaffold_490_26
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(31943..33220)
DNA (1278bp) protein (426aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NI4_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
hypothetical protein
13_1_40cm_4_scaffold_490_27
unknown

Not on your lists

33384..33713
DNA (330bp) protein (110aa)

This feature has no annotations

13_1_40cm_4_scaffold_490_28
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(33605..34234)
DNA (630bp) protein (210aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
ATPase associated with various cellular activities, AAA_3 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02B73_SOLUE
ATPase
13_1_40cm_4_scaffold_490_trna_1
unknown

Not on your lists

34302..34375
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_490_29
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

34422..34901
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V1M7_TERSS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV82308.1}; Flags: Precursor;; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanens
Displaying items 1-30 of 43 in total

View Taxonomy