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13_1_40cm_4_scaffold_6956

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_6956_1
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..557
DNA (555bp) protein (185aa)
Methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] Tax=GWD2_Deltaproteobacteria
Methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD id=2097792 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_4_scaffold_6956_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

586..1272
DNA (687bp) protein (229aa)
gcvT; glycine cleavage system aminomethyltransferase T; K00605 aminomethyltransferase [EC:2.1.2.10] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Aminomethyltransferase n=2 Tax=Desulfitobacterium hafniense RepID=GCST_DESHD
glycine cleavage system protein T
13_1_40cm_4_scaffold_6956_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1217..1672
DNA (456bp) protein (152aa)
gcvT; glycine cleavage system aminomethyltransferase T (EC:2.1.2.10); K00605 aminomethyltransferase [EC:2.1.2.10] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Aminomethyltransferase id=2097790 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
gcvT; glycine cleavage system aminomethyltransferase T
13_1_40cm_4_scaffold_6956_4
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1705..2142
DNA (438bp) protein (146aa)
gcvH; glycine cleavage complex lipoylprotein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Glycine cleavage system H protein id=2097787 bin=GWD2_Deltaproteobacteria_55_8 species=Tepidanaerobacter acetatoxydans genus=Tepidanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glycine cleavage system protein H
13_1_40cm_4_scaffold_6956_5
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2152..3498
DNA (1347bp) protein (449aa)
gcvPA; glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) (EC:1.4.4.2) Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_
glycine dehydrogenase (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 1 id=2097784 bin=GWD2_Deltaproteobacteria_55_8 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_4_scaffold_6956_6
unknown

Not on your lists

comp(3725..4012)
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_4_scaffold_6956_7
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(4031..4309)
DNA (279bp) protein (93aa)
Predicted metal-dependent RNase Tax=RBG_16_Actinobacteria_67_10_curated
13_1_40cm_4_scaffold_6956_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4970..5752)
DNA (783bp) protein (261aa)
TonB family protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
TonB-like id=2097775 bin=GWD2_Deltaproteobacteria_55_8 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
TonB family protein
13_1_40cm_4_scaffold_6956_9
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5841..6020
DNA (180bp) protein (60aa)
twin-arginine translocation protein, TatA/E family subunit; K03116 sec-independent protein translocase protein TatA Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Sec-independent protein translocase protein TatA id=4628514 bin=GWA2_Deltaproteo_65_63 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
tatA; Sec-independent protein translocase protein tatA/E homolog
13_1_40cm_4_scaffold_6956_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6046..7077)
DNA (1032bp) protein (344aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
13_1_40cm_4_scaffold_6956_11
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7236..7790
DNA (555bp) protein (185aa)
RNA polymerase, sigma-24 subunit, ECF subfamily id=1945488 bin=GWD2_Deltaproteobacteria_55_8 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWD2_Deltaproteobacteria_55_8_curated
hypothetical protein
13_1_40cm_4_scaffold_6956_12
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7787..8320
DNA (534bp) protein (178aa)
Transmembrane anti-sigma factor id=1945489 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Transmembrane anti-sigma factor Tax=GWD2_Deltaproteobacteria_55_8_curated
13_1_40cm_4_scaffold_6956_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8286..8744
DNA (459bp) protein (153aa)
Conserved uncharacterized protein id=1945490 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
hypothetical protein
13_1_40cm_4_scaffold_6956_14
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8752..9009)
DNA (258bp) protein (86aa)
Putative uncharacterized protein id=1945491 bin=GWD2_Deltaproteobacteria_55_8 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
iron-sulfur cluster-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
iron-sulfur cluster-binding protein
13_1_40cm_4_scaffold_6956_15
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9022..10029)
DNA (1008bp) protein (336aa)
cysteine synthase; K12339 cysteine synthase B [EC:2.5.1.47] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Cysteine synthase id=1945492 bin=GWD2_Deltaproteobacteria_55_8 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cysteine synthase
13_1_40cm_4_scaffold_6956_16
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10045..10323)
DNA (279bp) protein (93aa)
Similar to molybdopterin synthase subunit 1 id=1945493 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
sulfur transfer protein ThiS Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
MoaD family protein
13_1_40cm_4_scaffold_6956_17
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10445..11683)
DNA (1239bp) protein (413aa)
thrC1; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
thrC1; threonine synthase (EC:4.2.3.1)
Strongly similar to threonine synthase id=1945494 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_4_scaffold_6956_18
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11710..12504)
DNA (795bp) protein (265aa)
thiamine biosynthesis protein ThiF Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Dinucleotide-utilizing enzyme id=1945495 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
UBA/THIF-type NAD/FAD binding protein
13_1_40cm_4_scaffold_6956_19
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

12928..13992
DNA (1065bp) protein (355aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
MmgE/PrpD family protein id=1945496 bin=GWD2_Deltaproteobacteria_55_8 species=Rhizobium sp. genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_4_scaffold_6956_20
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

13989..14348
DNA (360bp) protein (120aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
MmgE/PrpD family protein id=24456892 bin=RBG_19FT_COMBO_GAL15_69_19 species=Oceanicola granulosus genus=Oceanicola taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
MmgE/PrpD family protein
13_1_40cm_4_scaffold_6956_21
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

14324..14602
DNA (279bp) protein (93aa)
MmgE/PrpD family protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
MmgE/PrpD family protein id=1901314 bin=GWD2_Deltaproteobacteria_55_8 species=Oceanicola granulosus genus=Oceanicola taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_4_scaffold_6956_22
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

14653..15624
DNA (972bp) protein (324aa)
MmgE/PrpD family protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
MmgE/PrpD family protein id=1901314 bin=GWD2_Deltaproteobacteria_55_8 species=Oceanicola granulosus genus=Oceanicola taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
MmgE/PrpD family protein
13_1_40cm_4_scaffold_6956_23
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15659..16678
DNA (1020bp) protein (340aa)
Candidate ABC type Fe3+ transport system, periplasmic component id=1901315 bin=GWD2_Deltaproteobacteria_55_8 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
iron ABC transporter substrate-binding protein; K02012 iron(III) transport system substrate-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
iron ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_6956_24
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16691..18406
DNA (1716bp) protein (572aa)
iron ABC transporter permease; K02011 iron(III) transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Candidate ABC type Fe3+ transport system, permease component with duplicated domains id=1901316 bin=GWD2_Deltaproteobacteria_55_8 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
iron ABC transporter permease
13_1_40cm_4_scaffold_6956_25
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18411..19499
DNA (1089bp) protein (363aa)
afuC; ABC transporter ATP-binding protein; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system id=1901317 bin=GWD2_Deltaproteobacteria_55_8 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
afuC; ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_6956_26
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19520..20443)
DNA (924bp) protein (308aa)
CAAX amino terminal protease Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Putative uncharacterized protein id=1901319 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
abortive infection protein
Displaying 26 items

View Taxonomy