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13_1_40cm_4_scaffold_520

Search features with annotation key words

Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_520_1
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

2..760
DNA (759bp) protein (253aa)
D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
D-alanine--D-alanine ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHQ8_KORVE
D-alanine--D-alanine ligase
13_1_40cm_4_scaffold_520_2
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

912..1367
DNA (456bp) protein (152aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
13_1_40cm_4_scaffold_520_3
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(1480..2562)
DNA (1083bp) protein (361aa)
ADP-heptose synthase Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
ADP-heptose synthase id=4579027 bin=GWA2_Elusimicrobia_69_24 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
rfaE bifunctional protein
13_1_40cm_4_scaffold_520_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2568..2741)
DNA (174bp) protein (58aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037B6387
hypothetical protein; K09791 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_40cm_4_scaffold_520_5
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(2823..3707)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI0003812E42
substrate-binding region of ABC-type glycine betaine transporter
Substrate-binding region of ABC-type glycine betaine transport system {ECO:0000313|EMBL:ACC81210.1}; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc pun
13_1_40cm_4_scaffold_520_6
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(3709..4341)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI000362452F
binding-protein-dependent transporters inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACC81209.1}; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punc
13_1_40cm_4_scaffold_520_7
Nostoc sp. PCC 7524, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(4338..5096)
DNA (759bp) protein (253aa)
ABC-type proline/glycine betaine transport system, ATPase component n=1 Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) RepID=K9QP11_NOSS7
proline/glycine betaine ABC transporter ATPase
ABC-type proline/glycine betaine transport system, ATPase component {ECO:0000313|EMBL:AFY46547.1}; TaxID=28072 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (
13_1_40cm_4_scaffold_520_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

5235..6563
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. SJ98 RepID=K8R057_9BURK id=5224891 bin=16ft_combo_ws3_JS1 species=Burkholderia sp. SJ98 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
13_1_40cm_4_scaffold_520_9
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

6764..7522
DNA (759bp) protein (253aa)
methyltransferase n=1 Tax=Burkholderia kururiensis RepID=UPI0003474A7E
methyltransferase Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
methyltransferase
13_1_40cm_4_scaffold_520_10
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(7565..9703)
DNA (2139bp) protein (713aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
alpha-amylase/alpha-mannosidase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
Glycoside hydrolase family 57 id=4815912 bin=GWC2_Deltaproteobacteria_55_46 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
13_1_40cm_4_scaffold_520_11
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(9779..10045)
DNA (267bp) protein (89aa)
4Fe-4S ferredoxin, iron-sulfur binding domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A86_SOLUE
4Fe-4S ferredoxin Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
4Fe-4S ferredoxin
13_1_40cm_4_scaffold_520_12
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

10240..10794
DNA (555bp) protein (185aa)
Thiol-disulfide isomerase and thioredoxins Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
alkyl hydroperoxide reductase id=24460620 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Thiol-disulfide isomerase and thioredoxins
13_1_40cm_4_scaffold_520_13
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

10827..11543
DNA (717bp) protein (239aa)
UPF0173 metal-dependent hydrolase Tter_0760 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFH1_THET1
beta-lactamase
UPF0173 metal-dependent hydrolase Tter_0760 {ECO:0000256|HAMAP-Rule:MF_00457}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
13_1_40cm_4_scaffold_520_14
unknown

Not on your lists

11565..12008
DNA (444bp) protein (148aa)

This feature has no annotations

13_1_40cm_4_scaffold_520_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12009..12425
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Methylomicrobium album BG8 RepID=H8GMR4_METAL
Uncharacterized protein {ECO:0000313|EMBL:CDM65776.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
13_1_40cm_4_scaffold_520_16
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

12466..13116
DNA (651bp) protein (217aa)
O-methyltransferase family protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SRI1_9BACT
O-methyltransferase family protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
O-methyltransferase
13_1_40cm_4_scaffold_520_17
GWA2_OD1_52_12, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(13160..14071)
DNA (912bp) protein (304aa)
L-proline dehydrogenase (EC:1.5.99.8)
L-proline dehydrogenase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026S2_SOLUE
L-proline dehydrogenase {ECO:0000313|EMBL:KKW25068.1}; TaxID=1618671 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Kaiserbacteria) bacterium GW2011_GWA2_52_12.;"
13_1_40cm_4_scaffold_520_18
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(14107..15030)
DNA (924bp) protein (308aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriacea
Thioredoxin reductase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS11_KORVE
thioredoxin reductase
13_1_40cm_4_scaffold_520_19

Not on your lists

15243..15764
DNA (522bp) protein (174aa)
DinB superfamily {ECO:0000313|EMBL:AIA12873.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Putative metal-dependent hydrolase yfiT id=2225161 bin=GWA2_Ignavibacteria_55_11 species=Deinococcus peraridilitoris genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
DinB-like domain protein
13_1_40cm_4_scaffold_520_20
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

15855..16382
DNA (528bp) protein (176aa)
cypB; peptidyl-prolyl cis-trans isomerase B (Rotamase B) (Cyclophilin ScCypB) (S-cyclophilin) (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKZ4_9BACT
peptidyl-prolyl cis-trans isomerase Tax=CG_Arma_01
13_1_40cm_4_scaffold_520_21
unknown

Not on your lists

16397..16756
DNA (360bp) protein (120aa)

This feature has no annotations

13_1_40cm_4_scaffold_520_22
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(16828..19068)
DNA (2241bp) protein (747aa)
Amino acid transporters n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XN7_SOLUE
amino acid transporter
Amino acid transporters {ECO:0000313|EMBL:ABJ85578.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
13_1_40cm_4_scaffold_520_23
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(19258..19815)
DNA (558bp) protein (186aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRA4_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40596.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacte
13_1_40cm_4_scaffold_520_24
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(19990..20373)
DNA (384bp) protein (128aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVP6_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF39054.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacte
13_1_40cm_4_scaffold_520_25
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(20421..22643)
DNA (2223bp) protein (741aa)
ABC transporter related protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V0Y3_TERSS
ABC transporter; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
ABC transporter-like protein
13_1_40cm_4_scaffold_520_26
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(22643..23995)
DNA (1353bp) protein (451aa)
ABC efflux pump, inner membrane subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQI0_KORVE
efflux ABC transporter inner membrane protein
ABC efflux pump, inner membrane subunit {ECO:0000313|EMBL:ABF40870.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" s
13_1_40cm_4_scaffold_520_27
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(24011..25330)
DNA (1320bp) protein (440aa)
Iron permease FTR1 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQH9_KORVE
iron permease FTR1 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
iron permease
13_1_40cm_4_scaffold_520_28
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

25406..27631
DNA (2226bp) protein (742aa)
Type II and III secretion system protein n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X5B9_ACISM
type II and III secretion system protein
Type II and III secretion system protein {ECO:0000313|EMBL:ADW69466.1}; Flags: Precursor;; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="
13_1_40cm_4_scaffold_520_29
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27859..28125
DNA (267bp) protein (89aa)
hypothetical protein, partial n=1 Tax=Zavarzinella formosa RepID=UPI00035DCC87
hypothetical protein Tax=RBG_16_Deltaproteobacteria_50_11_curated
Na-Ca exchanger/integrin-beta4
Displaying 29 items

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