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13_1_40cm_4_scaffold_10798

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Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_10798_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2..439
DNA (438bp) protein (146aa)
Peptide ABC transporter membrane protein id=4905398 bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_10798_2
unknown

Not on your lists

444..560
DNA (117bp) protein (39aa)

This feature has no annotations

13_1_40cm_4_scaffold_10798_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

553..1977
DNA (1425bp) protein (475aa)
Amidase (EC:3.5.1.4); K01426 amidase [EC:3.5.1.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
amidase (EC:3.5.1.4)
Amidase id=4905367 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_10798_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1974..2369)
DNA (396bp) protein (132aa)
methylmalonyl-CoA epimerase; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] id=14626336 bin=bin7_NC10_sister species=Aneurinibacillus aneurinilyticus genus=Aneurinibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methylmalonyl-CoA epimerase; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] Tax=CSP1_6_Rokubacteria
methylmalonyl-CoA epimerase
13_1_40cm_4_scaffold_10798_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2395..2568)
DNA (174bp) protein (58aa)
ushA; 5'-nucleotidase (EC:3.1.3.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterase
13_1_40cm_4_scaffold_10798_6
unknown

Not on your lists

3119..3988
DNA (870bp) protein (290aa)

This feature has no annotations

13_1_40cm_4_scaffold_10798_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3931..5202)
DNA (1272bp) protein (424aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HB43_ANADF
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_10798_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5269..6012)
DNA (744bp) protein (248aa)
hypothetical protein; K07019 Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein; K07019 id=14626593 bin=bin7_NC10_sister species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase fold protein
13_1_40cm_4_scaffold_10798_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(6219..6413)
DNA (195bp) protein (65aa)
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein id=14626594 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_10798_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6468..6752)
DNA (285bp) protein (95aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4905363 bin=GWA2_Methylomirabilis_73_35 species=Saccharomonospora marina genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_10798_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6775..7584)
DNA (810bp) protein (270aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626596 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_10798_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7946..11380
DNA (3435bp) protein (1145aa)
Adenylyl cyclase class-3/4/guanylyl cyclase:Tetratricopeptide TPR_4 id=4599716 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus pinatubonensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
adenylyl cyclase Tax=GWC2_Rokubacteria_70_16_curated
adenylate/guanylate cyclase
13_1_40cm_4_scaffold_10798_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(11377..11811)
DNA (435bp) protein (145aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14626598 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_10798_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(12618..12917)
DNA (300bp) protein (100aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14626599 bin=bin7_NC10_sister species=Saccharomonospora marina genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_10798_15
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13326..14225)
DNA (900bp) protein (300aa)
67-dimethyl-8-ribityllumazine synthase protein {ECO:0000313|EMBL:ERJ05075.1}; EC=2.5.1.78 {ECO:0000313|EMBL:ERJ05075.1};; Alpha/beta hydrolase family protein {ECO:0000313|EMBL:CCQ34598.1}; TaxID=10338
67-dimethyl-8-ribityllumazine synthase protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PNC4_9EURY
alpha/beta hydrolase family protein
13_1_40cm_4_scaffold_10798_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(14222..15265)
DNA (1044bp) protein (348aa)
EmrB/QacA family drug resistance transporter Tax=CSP1_6_Rokubacteria
EmrB/QacA family drug resistance transporter id=14625974 bin=bin7_NC10_sister species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator superfamily transporter
13_1_40cm_4_scaffold_10798_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15397..15792
DNA (396bp) protein (132aa)
thioesterase family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
thioesterase family protein id=14626601 bin=bin7_NC10_sister species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_10798_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15792..16247
DNA (456bp) protein (152aa)
MaoC-like dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
MaoC-like dehydratase id=2783137 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC-like dehydratase
13_1_40cm_4_scaffold_10798_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16244..16627
DNA (384bp) protein (128aa)
MaoC-like dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyl dehydratase id=2783141 bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC-like dehydratase
13_1_40cm_4_scaffold_10798_20
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16652..17524
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P7U4_9BACT
hypothetical protein Tax=RBG_16_Gamma2_60_9_curated
hypothetical protein
13_1_40cm_4_scaffold_10798_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17547..18038)
DNA (492bp) protein (164aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=2783143 bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_10798_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

18526..19371
DNA (846bp) protein (282aa)
putative Leu/Ile/Val-binding protein homolog 8 Tax=CSP1_6_Rokubacteria
putative Leu/Ile/Val-binding protein homolog 8 id=14626605 bin=bin7_NC10_sister species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
extracellular ligand-binding receptor
13_1_40cm_4_scaffold_10798_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

19447..20199
DNA (753bp) protein (251aa)
putative Branched-chain amino acid ABC transporter (permease protein); livH-like protein id=14626606 bin=bin7_NC10_sister species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative Branched-chain amino acid ABC transporter (permease protein); livH-like protein Tax=CSP1_6_Rokubacteria
branched-chain amino acid ABC superfamily ATP binding cassette transporter
13_1_40cm_4_scaffold_10798_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

20196..21170
DNA (975bp) protein (325aa)
putative ABC transporter permiase component id=14626607 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
putative ABC transporter permiase component Tax=CSP1_6_Rokubacteria
putative ABC transporter permiase component
13_1_40cm_4_scaffold_10798_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21527..21820
DNA (294bp) protein (98aa)
ABC transporter-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter ATP-binding protein id=14625344 bin=bin7_NC10_sister species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_10798_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21823..23013
DNA (1191bp) protein (397aa)
livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related id=3635567 bin=GWC2_Methylomirabilis_70_16 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
branched-chain amino acid ABC transporter ATPase
13_1_40cm_4_scaffold_10798_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23265..24491
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003652FCD
putative transposase for insertion sequence NGRIS-13h Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
transposase for insertion sequence NGRIS-13g
Displaying 27 items

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