ggKbase home page

13_1_40cm_4_scaffold_1358

Search features with annotation key words

Displaying 30 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1358_trna_1
unknown

Not on your lists

2..73
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_1358_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

277..636
DNA (360bp) protein (120aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
id=3411149 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1358_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

642..968
DNA (327bp) protein (109aa)
Putative transcriptional regulator, XRE family id=3435272 bin=GWA2_Methylomirabilis_73_35 species=Bifidobacterium longum genus=Bifidobacterium taxon_order=Bifidobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator, XRE family Tax=GWA2_Rokubacteria_73_35_curated
transcriptional regulator
13_1_40cm_4_scaffold_1358_3
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1451..2242)
DNA (792bp) protein (264aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX08573.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Short-chain dehydrogenase/reductase id=1773283 bin=GWD2_Deltaproteobacteria_55_8 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
dehydrogenase
13_1_40cm_4_scaffold_1358_4
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2242..3435)
DNA (1194bp) protein (398aa)
Formyl-CoA transferase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2I8Z6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ETW95254.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
2-keto-4-pentenoate hydratase
13_1_40cm_4_scaffold_1358_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3496..4362
DNA (867bp) protein (289aa)
alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase (EC:1.14.11.-); K06912 alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase [EC:1.14.11.-] Tax=RIFCSPHIGHO2_12_FULL
alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase (EC:1.14.11.-)
Probable taurine catabolism dioxygenase n=1 Tax=uncultured alpha proteobacterium HF0130_20P23 RepID=E0XT93_9PROT
13_1_40cm_4_scaffold_1358_6
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4523..5581
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037C9B61
Uncharacterized protein {ECO:0000313|EMBL:ETW95758.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
luciferase-like monooxygenase
13_1_40cm_4_scaffold_1358_7
RLO_PLX_64_10, Bacteria

Not on your lists

5578..6693
DNA (1116bp) protein (372aa)
mandelate racemase/muconate lactonizing protein; K02549 O-succinylbenzoate synthase [EC:4.2.1.113] Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
menC; o-succinylbenzoate synthase (EC:4.2.1.113)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037EA3F9
13_1_40cm_4_scaffold_1358_8
R_Elusimicrobia_60_11, Elusimicrobia, Bacteria

Not on your lists

6701..8134
DNA (1434bp) protein (478aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_60_11_curated
hypothetical protein id=14624914 bin=bin5_DeltaP species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_4_scaffold_1358_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8134..9093
DNA (960bp) protein (320aa)
PepT family ABC transporter ATP-binding protein (EC:3.6.3.23)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000363F763
oligopeptide/dipeptide ABC transporter ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
13_1_40cm_4_scaffold_1358_10
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9104..10699
DNA (1596bp) protein (532aa)
Extracellular solute-binding protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CFC4_9RHIZ
Extracellular solute-binding protein {ECO:0000313|EMBL:EIZ82707.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="
Putative extracellular solute-binding protein
13_1_40cm_4_scaffold_1358_11
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10710..11597
DNA (888bp) protein (296aa)
ABC transporter permease n=2 Tax=Thauera RepID=N6YNK8_9RHOO
ABC transporter permease {ECO:0000313|EMBL:KJB94075.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella ae
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_1358_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11597..12517
DNA (921bp) protein (307aa)
Putative permease component of ABC transporter n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M431_RHIL3
ABC transporter permease
Putative permease component of ABC transporter {ECO:0000313|EMBL:CAK12141.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium gr
13_1_40cm_4_scaffold_1358_13
unknown

Not on your lists

comp(12406..12648)
DNA (243bp) protein (81aa)

This feature has no annotations

13_1_40cm_4_scaffold_1358_14
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12603..12863)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TED8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDT38061.1}; TaxID=396597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex
13_1_40cm_4_scaffold_1358_15
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13070..13489
DNA (420bp) protein (140aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89C79_BRADU
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAR55322.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Brady
13_1_40cm_4_scaffold_1358_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13554..14036
DNA (483bp) protein (161aa)
Uncharacterized protein id=3716791 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_1358_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

14152..14580
DNA (429bp) protein (143aa)
id=14625340 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_1358_18
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14705..15742
DNA (1038bp) protein (346aa)
ABC transporter, solute-binding protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A4C1_9PROT
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EHL98234.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacte
putative ABC transporter, substrate-binding protein
13_1_40cm_4_scaffold_1358_19
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15742..17829
DNA (2088bp) protein (696aa)
Iron ABC transporter, permease protein, putative n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQC6_9PROT
Iron ABC transporter, permease protein, putative {ECO:0000313|EMBL:EDP65013.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
binding-protein-dependent transport systems inner membrane component
13_1_40cm_4_scaffold_1358_20
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17868..18017
DNA (150bp) protein (50aa)
ABC-type spermidine/putrescine transport system, ATPase component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXK6_9RHIZ
ABC-type spermidine/putrescine transport system, ATPase component {ECO:0000313|EMBL:EIM28698.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Me
ABC transporter
13_1_40cm_4_scaffold_1358_21
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18014..18862
DNA (849bp) protein (283aa)
Fe(3+) ions import ATP-binding protein FbpC {ECO:0000256|HAMAP-Rule:MF_01706}; EC=3.6.3.30 {ECO:0000256|HAMAP-Rule:MF_01706};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhiz
sugar ABC transporter substrate-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D9D417
ABC transporter
13_1_40cm_4_scaffold_1358_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18982..20595)
DNA (1614bp) protein (538aa)
Drug resistance transporter, EmrB/QacA subfamily id=4748857 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B Tax=GWC2_Rokubacteria_70_16_curated
DSBA oxidoreductase
13_1_40cm_4_scaffold_1358_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

20633..20971
DNA (339bp) protein (113aa)
id=14626178 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_1358_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20980..21771)
DNA (792bp) protein (264aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_1_40cm_4_scaffold_1358_25
unknown

Not on your lists

comp(22095..22649)
DNA (555bp) protein (185aa)

This feature has no annotations

13_1_40cm_4_scaffold_1358_26
unknown

Not on your lists

comp(22683..22901)
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_40cm_4_scaffold_1358_27
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

22997..23668
DNA (672bp) protein (224aa)
Ferredoxin id=3388822 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ferredoxin Tax=GWA2_Rokubacteria_70_23_curated
ferredoxin
13_1_40cm_4_scaffold_1358_28
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23669..25432
DNA (1764bp) protein (588aa)
Oligopeptide ABC transporter, periplasmic component n=1 Tax=Oceanibaculum indicum P24 RepID=K2JUV4_9PROT
oligopeptide ABC transporter, periplasmic component; K13893 microcin C transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
oligopeptide ABC transporter, periplasmic component
13_1_40cm_4_scaffold_1358_29
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25432..26265
DNA (834bp) protein (278aa)
Oligopeptide ABC transporter, permease component n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AIN0_AZOBR
microcin ABC transporter permease
Microcin ABC transporter permease {ECO:0000313|EMBL:AIB10795.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospiri
Displaying 30 items

View Taxonomy