ggKbase home page

13_1_40cm_4_scaffold_263

Search features with annotation key words

Displaying 26 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_263_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2..376
DNA (375bp) protein (125aa)
RNA polymerase sigma factor id=4748232 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA polymerase sigma factor RpoD-like; K03086 RNA polymerase primary sigma factor Tax=GWA2_Rokubacteria_73_35_curated
RNA polymerase sigma-70 subunit RpoD
13_1_40cm_4_scaffold_263_2
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(622..1464)
DNA (843bp) protein (281aa)
Bll8153 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89BJ5_BRADU
hypothetical protein
Bll8153 protein {ECO:0000313|EMBL:BAC53418.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoeffici
13_1_40cm_4_scaffold_263_3
unknown

Not on your lists

comp(1932..2384)
DNA (453bp) protein (151aa)

This feature has no annotations

13_1_40cm_4_scaffold_263_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

2448..3689
DNA (1242bp) protein (414aa)
Extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Extracellular ligand-binding receptor id=4827657 bin=GWA2_Methylomirabilis_73_35 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative substrate-binding ABC transporter protein
13_1_40cm_4_scaffold_263_5
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3699..4937)
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037ABD21
Uncharacterized protein {ECO:0000313|EMBL:ETW94232.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
major facilitator superfamily MFS_1
13_1_40cm_4_scaffold_263_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4963..5418)
DNA (456bp) protein (152aa)
hypothetical protein id=3963833 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_263_7
unknown

Not on your lists

comp(5415..5855)
DNA (441bp) protein (147aa)

This feature has no annotations

13_1_40cm_4_scaffold_263_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5852..7405)
DNA (1554bp) protein (518aa)
propionyl-CoA carboxylase (EC:6.4.1.3) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
propionyl-CoA carboxylase (EC:6.4.1.3)
Propionyl-CoA carboxylase id=4153737 bin=GWC2_Methylomirabilis_70_16 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_263_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7422..7931)
DNA (510bp) protein (170aa)
putative DinB family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DinB family protein id=14625385 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
DinB family protein
13_1_40cm_4_scaffold_263_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(8089..8304)
DNA (216bp) protein (72aa)
Biotin/lipoyl attachment domain-containing protein id=4153683 bin=GWC2_Methylomirabilis_70_16 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
biotin/lipoyl attachment domain-containing protein Tax=GWC2_Rokubacteria_70_16_curated
biotin/lipoyl attachment domain-containing protein
13_1_40cm_4_scaffold_263_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8297..9643)
DNA (1347bp) protein (449aa)
biotin carboxylase (EC:6.3.4.14 6.4.1.1); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Carbamoyl-phosphate synthase L chain ATP-binding protein id=4748227 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Carbamoyl-phosphate synthase L chain ATP-binding protein
13_1_40cm_4_scaffold_263_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(9646..10629)
DNA (984bp) protein (328aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Uncharacterized protein id=3782407 bin=GWF2_Methylomirabilis_70_14 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_263_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10626..11381)
DNA (756bp) protein (252aa)
Putative uncharacterized protein id=4375090 bin=GWC2_Methylomirabilis_70_24 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_263_14
CG_Mariprof_03, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11537..11806
DNA (270bp) protein (90aa)
phosphopantetheine-binding protein Tax=CG_Mariprof_03
hypothetical protein
13_1_40cm_4_scaffold_263_15
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

11857..13122
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW99_9BACT
Putative polyketide synthase component Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
13_1_40cm_4_scaffold_263_16
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13104..14327
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI0003669E5E
putative FAD-dependent oxidoreductase Tax=GWA2_Curvibacter_64_110_curated
FAD dependent oxidoreductase
13_1_40cm_4_scaffold_263_17
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

14324..15715
DNA (1392bp) protein (464aa)
menE; 2-succinylbenzoate-CoA ligase MenE (EC:6.2.1.26) Tax=GWC2_Nitrospirae_57_13_curated
Putative uncharacterized protein id=3838777 bin=GWC2_Nitrospirae_57_13 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
acyl-CoA synthetase
13_1_40cm_4_scaffold_263_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

15712..17016
DNA (1305bp) protein (435aa)
Monooxygenase FAD-binding n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW95_9BACT
Monooxygenase FAD-binding {ECO:0000313|EMBL:EDY21687.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
tryptophan halogenase
13_1_40cm_4_scaffold_263_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(17156..17902)
DNA (747bp) protein (249aa)
methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
demethylmenaquinone methyltransferase (EC:2.1.1.-)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00036DA888
13_1_40cm_4_scaffold_263_20
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18019..19218)
DNA (1200bp) protein (400aa)
Polyketide synthase n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1FUC5_9PSEU
Polyketide synthase {ECO:0000313|EMBL:EOD62968.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 445
beta-ketoacyl synthase
13_1_40cm_4_scaffold_263_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19221..19796)
DNA (576bp) protein (192aa)
Lauroyl/myristoyl acyltransferase (EC:2.3.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] id=14627959 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
lipid A biosynthesis acyltransferase
13_1_40cm_4_scaffold_263_22
unknown

Not on your lists

comp(19774..20103)
DNA (330bp) protein (110aa)

This feature has no annotations

13_1_40cm_4_scaffold_263_23
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

20174..20896
DNA (723bp) protein (241aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RCW6_AMMDK
3-oxoacyl-(Acyl-carrier-protein) reductase Tax=S_Thermoanaerobacterales_50_218
3-oxoacyl-(acyl-carrier-protein) reductase
13_1_40cm_4_scaffold_263_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20910..22082)
DNA (1173bp) protein (391aa)
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7) id=14625377 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7)
13_1_40cm_4_scaffold_263_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(22172..22645)
DNA (474bp) protein (158aa)
metal dependent phosphohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Metal dependent phosphohydrolase id=4848465 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase
13_1_40cm_4_scaffold_263_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22853..23515)
DNA (663bp) protein (221aa)
cysE; serine acetyltransferase (EC:2.3.1.30) Tax=GWA2_Rokubacteria_73_35_curated
cysE; serine acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase id=4848469 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 26 items

View Taxonomy