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13_1_40cm_4_scaffold_3101

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Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3101_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1..1020)
DNA (1020bp) protein (340aa)
gcvT3; glycine cleavage system T protein (EC:1.5.99.2)
FAD-dependent oxidoreductase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00036EB244
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_3101_2
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1032..1652)
DNA (621bp) protein (207aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C8Q4_DESTA
transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:AFM25945.1}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntr
13_1_40cm_4_scaffold_3101_3
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1665..2525)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Frankia sp. BMG5.12 RepID=UPI000377B208
Luciferase {ECO:0000313|EMBL:KDN23690.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
luciferase family protein
13_1_40cm_4_scaffold_3101_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2536..5460)
DNA (2925bp) protein (975aa)
glpC; D-lactate dehydrogenase (cytochrome) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glr3436 protein id=3830908 bin=GWF2_Methylomirabilis_70_14 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase
13_1_40cm_4_scaffold_3101_5
unknown

Not on your lists

5543..5806
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_40cm_4_scaffold_3101_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5816..6307
DNA (492bp) protein (164aa)
Thiol-disulfide isomerase and thioredoxins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiol-disulfide isomerase and thioredoxins id=3830905 bin=GWF2_Methylomirabilis_70_14 species=Magnetospirillum sp. SO-1 genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Thiol-disulfide isomerase and thioredoxins
13_1_40cm_4_scaffold_3101_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(6304..7584)
DNA (1281bp) protein (427aa)
Natural resistance-associated macrophage protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SI9_SOLUE
natural resistance-associated macrophage protein
Natural resistance-associated macrophage protein {ECO:0000313|EMBL:ABJ87381.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" s
13_1_40cm_4_scaffold_3101_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7559..8566)
DNA (1008bp) protein (336aa)
ROK family protein; K00845 glucokinase [EC:2.7.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional repressor; K00845 glucokinase [EC:2.7.1.2] id=14627250 bin=bin7_NC10_sister species=Shinella zoogloeoides genus=Shinella taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ROK family protein
13_1_40cm_4_scaffold_3101_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8640..9383)
DNA (744bp) protein (248aa)
YdjC-like protein id=3269465 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
YdjC-like protein; K03478 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_3101_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9380..10069)
DNA (690bp) protein (230aa)
Methylase id=3269468 bin=GWA2_Methylomirabilis_73_35 species=Methanothermobacter marburgensis genus=Methanothermobacter taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase Tax=GWA2_Rokubacteria_73_35_curated
methyltransferase-like protein
13_1_40cm_4_scaffold_3101_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10069..10380)
DNA (312bp) protein (104aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3269471 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3101_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10517..10627)
DNA (111bp) protein (37aa)
id=14627246 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14627246 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_3101_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10702..12354)
DNA (1653bp) protein (551aa)
ggt; gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ggt; gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase id=3269474 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3101_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12365..12862)
DNA (498bp) protein (166aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3269477 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3101_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(12924..15524)
DNA (2601bp) protein (867aa)
helicase Tax=GWC2_Rokubacteria_70_16_curated
Putative helicase id=3914659 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
helicase
13_1_40cm_4_scaffold_3101_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15552..16037
DNA (486bp) protein (162aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
YCII-related id=3269626 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
YCII-related protein
13_1_40cm_4_scaffold_3101_17
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

16069..17100
DNA (1032bp) protein (344aa)
potD2; putative ABC transporter, spermidine/putrescine-binding protein PotD id=24466482 bin=RBG_19FT_COMBO_GAL15_69_19 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
potD2; putative ABC transporter, spermidine/putrescine-binding protein PotD Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_3101_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

17067..18155
DNA (1089bp) protein (363aa)
spermidine/putrescine ABC transporter ATPase; K02052 putative spermidine/putrescine transport system ATP-binding protein Tax=GWA2_Rokubacteria_70_23_curated
Spermidine/putrescine ABC transporter ATPase subunit id=4565338 bin=GWC2_Methylomirabilis_70_24 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
spermidine/putrescine ABC transporter ATPase
13_1_40cm_4_scaffold_3101_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

18172..18852
DNA (681bp) protein (227aa)
AroM protein id=4565337 bin=GWC2_Methylomirabilis_70_24 species=Anaerobaculum hydrogeniformans genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein; K14591 protein AroM Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_3101_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

18977..19822
DNA (846bp) protein (282aa)
Putative ABC spermidine/putrescine transporter permease protein id=4565336 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
potB; putative spermidine/putrescine transport system, permease protein PotB Tax=GWA2_Rokubacteria_70_23_curated
ABC spermidine/putrescine transporter permease
13_1_40cm_4_scaffold_3101_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19819..20592
DNA (774bp) protein (258aa)
ABC transporter permease protein id=4565335 bin=GWC2_Methylomirabilis_70_24 species=Azorhizobium caulinodans genus=Azorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter permease
13_1_40cm_4_scaffold_3101_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20592..21665
DNA (1074bp) protein (358aa)
hypothetical protein; K09703 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3859517 bin=GWF2_Methylomirabilis_70_14 species=Rhizobium sp. CF080 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Protein of hypothetical function DUF917
13_1_40cm_4_scaffold_3101_23
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

21662..23197
DNA (1536bp) protein (512aa)
Hydantoinase A id=4565333 bin=GWC2_Methylomirabilis_70_24 species=Azorhizobium caulinodans genus=Azorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hydantoinase A Tax=GWA2_Rokubacteria_70_23_curated
hyuA; hydantoinase A
13_1_40cm_4_scaffold_3101_24
Limnoraphis robusta, Limnoraphis, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(23134..24279)
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00037892F1
Uncharacterized protein {ECO:0000313|EMBL:KKD35550.1}; TaxID=1637645 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Limnoraphis.;" source="Limnoraphis robusta CS-951.;"
multi-sensor hybrid histidine kinase
13_1_40cm_4_scaffold_3101_25
unknown

Not on your lists

comp(24264..24458)
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_4_scaffold_3101_26
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(24458..24706)
DNA (249bp) protein (83aa)
id=14626762 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_3101_27
unknown

Not on your lists

comp(24807..25079)
DNA (273bp) protein (91aa)

This feature has no annotations

13_1_40cm_4_scaffold_3101_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25091..26257)
DNA (1167bp) protein (389aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3960244 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_3101_29
Pseudomonas mandelii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26301..26741
DNA (441bp) protein (147aa)
N-acetyltransferase GCN5 n=1 Tax=Pseudomonas chlororaphis subsp. aurantiaca PB-St2 RepID=V8DDG3_9PSED
N-acetyltransferase GCN5
N-acetyltransferase GCN5 {ECO:0000313|EMBL:KDD67622.1}; TaxID=1419583 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mand
13_1_40cm_4_scaffold_3101_30
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

26781..27074
DNA (294bp) protein (98aa)
pyridoxal-phosphate dependent TrpB-like enzyme; K06001 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Tryptophan synthase beta chain id=3960243 bin=GWA2_Methylomirabilis_73_35 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyridoxal-phosphate dependent TrpB-like enzyme
Displaying 30 items

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