ggKbase home page

13_1_40cm_4_scaffold_18920

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_18920_1
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(3..785)
DNA (783bp) protein (261aa)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase (EC:5.3.3.10) Tax=RBG_16_Aminicenantes_63_16_curated
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10) id=24398161 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
13_1_40cm_4_scaffold_18920_2
GWA2_Deltaproteobacteria_54_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(794..1303)
DNA (510bp) protein (170aa)
translation elongation factor P (EF-P); K02356 elongation factor P Tax=GWA2_Deltaproteobacteria_54_12_curated
translation elongation factor P (EF-P); K02356 elongation factor P id=15193142 bin=GWC2_NOV_55_46 tax=GWC2_NOV_55_46 organism_group=Proteobacteria
translation elongation factor P (EF-P)
13_1_40cm_4_scaffold_18920_3
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1729..2319
DNA (591bp) protein (197aa)
NAD+ synthetase (EC:6.3.1.5)
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; TaxID=562970 species="
NH(3)-dependent NAD(+) synthetase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WW84_KYRT2
13_1_40cm_4_scaffold_18920_4
unknown

Not on your lists

2894..3205
DNA (312bp) protein (104aa)

This feature has no annotations

13_1_40cm_4_scaffold_18920_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

3202..3690
DNA (489bp) protein (163aa)
SsrA-binding protein n=1 Tax=mine drainage metagenome RepID=E6QIQ5_9ZZZZ
smpB; ssrA-binding protein; K03664 SsrA-binding protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
smpB; SsrA-binding protein
13_1_40cm_4_scaffold_18920_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(3678..4469)
DNA (792bp) protein (264aa)
thiG; thiamine biosynthesis protein ThiG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
thiG; thiamine biosynthesis protein ThiG id=14627028 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
thiG; thiazole synthase
13_1_40cm_4_scaffold_18920_7
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4469..4669)
DNA (201bp) protein (67aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQ94_PSEUU
thiamine biosynthesis protein ThiS
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:ADV26343.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="P
13_1_40cm_4_scaffold_18920_8
unknown

Not on your lists

comp(4684..4965)
DNA (282bp) protein (94aa)

This feature has no annotations

13_1_40cm_4_scaffold_18920_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(4929..5312)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P0R3_9BACT
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
13_1_40cm_4_scaffold_18920_10
CSP1_5_NC10, NC10, Bacteria

Not on your lists

5556..6434
DNA (879bp) protein (293aa)
hypothetical protein id=14430100 bin=bin3_NC10 species=Lewinella persica genus=Lewinella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
hypothetical protein
13_1_40cm_4_scaffold_18920_11
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6431..7471
DNA (1041bp) protein (347aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TRI6_DESML
mandelate racemase/muconate lactonizing protein Tax=RifOxyA12_full_Proteobacteria_58_15_curated
mandelate racemase/muconate lactonizing protein
13_1_40cm_4_scaffold_18920_12
CG_Desulfob_01, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7487..8899)
DNA (1413bp) protein (471aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C3R6_DESTA
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=CG_Desulfob_01
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
13_1_40cm_4_scaffold_18920_13
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(9510..10214)
DNA (705bp) protein (235aa)
diguanylate cyclase/phosphodiesterase
Diguanylate phosphodiesterase id=1999536 bin=GWD2_Nitrospirae-related_57_8 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=BJP_08E140C01_Coriobacteriales_62_12
13_1_40cm_4_scaffold_18920_14
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

comp(10844..12121)
DNA (1278bp) protein (426aa)
GAF domain-containing sensor diguanylate cyclase Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
Conserved uncharacterized protein id=4087792 bin=GWC2_Deltaproteobacteria_42_51 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
GAF sensor-containing diguanylate cyclase
13_1_40cm_4_scaffold_18920_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12543..13370
DNA (828bp) protein (276aa)
Periplasmic binding protein id=2285114 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
periplasmic binding protein
13_1_40cm_4_scaffold_18920_16
unknown

Not on your lists

comp(14679..15425)
DNA (747bp) protein (249aa)

This feature has no annotations

13_1_40cm_4_scaffold_18920_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15650..16462
DNA (813bp) protein (271aa)
Protein FdhD homolog n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ02_9BACT
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187, ECO:0000256|SAAS:SAAS00093832}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivisio
formate dehydrogenase accessory protein
13_1_40cm_4_scaffold_18920_18
RBG_16_Elusimicrobia_66_12_curated, Elusimicrobia, Bacteria

Not on your lists

16484..17587
DNA (1104bp) protein (368aa)
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2] Tax=RBG_16_Elusimicrobia_66_12_curated
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAK2_GEMAT
13_1_40cm_4_scaffold_18920_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

18571..18951
DNA (381bp) protein (127aa)
Ferredoxin id=3877210 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ferredoxin Tax=GWA2_Rokubacteria_70_23_curated
ferredoxin
13_1_40cm_4_scaffold_18920_20
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19000..19968
DNA (969bp) protein (323aa)
multi-sensor signal transduction histidine kinase Tax=RBG_13_Deltaproteobacteria_65_10_curated
multi-sensor signal transduction histidine kinase id=24429127 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
histidine kinase
13_1_40cm_4_scaffold_18920_21
GWA2_Desulfovibrionales_65_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20526..20882)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FS15_9BURK
Tax=GWA2_Desulfovibrionales_65_9_curated
13_1_40cm_4_scaffold_18920_22
GWA2_Desulfovibrionales_65_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21171..21374)
DNA (204bp) protein (68aa)
id=24654277 Tax=GWA2_Desulfovibrionales_65_9_curated
13_1_40cm_4_scaffold_18920_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

21524..22015
DNA (492bp) protein (164aa)
acs; acetyl-coenzyme A synthetase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
acetyl-CoA synthetase n=1 Tax=Desulfurispora thermophila RepID=UPI00036AE22C
Acetyl-coenzyme A synthetase
13_1_40cm_4_scaffold_18920_24
GWA2_WOR_2_53_43_curated, WOR-2, Bacteria

Not on your lists

comp(22371..22700)
DNA (330bp) protein (110aa)
Putative succinate dehydrogenase, iron-sulfur subunit id=4324788 bin=GWA2_OP3_53_43 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
putative succinate dehydrogenase, iron-sulfur subunit Tax=GWA2_WOR_2_53_43_curated
fumarate reductase iron-sulfur subunit
Displaying 24 items

View Taxonomy